PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_25415 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9210.23 Da PI: 8.9569 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.6 | 4.9e-12 | 11 | 58 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 WT+ +l+ +a + +G + +Wk++a+ +g g++++++k+++ ++ PEQU_25415 11 TWTPKQNKLFERALAVYGEEtpeRWKKVAKAVGGGKSAEEVKLHYENL 58 7*****************99*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 9.612 | 7 | 63 | IPR017884 | SANT domain |
SMART | SM00717 | 5.6E-10 | 8 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.19E-13 | 10 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.94E-7 | 11 | 59 | No hit | No description |
Pfam | PF00249 | 4.1E-10 | 11 | 58 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-6 | 11 | 59 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
MGSRGTGDSS TWTPKQNKLF ERALAVYGEE TPERWKKVAK AVGGGKSAEE VKLHYENLVE 60 DLRHIESGNV PLPNYNRDSN HK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-24 | 3 | 75 | 4 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020573085.1 | 3e-55 | protein RADIALIS-like 3 | ||||
Refseq | XP_020573086.1 | 3e-55 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 2e-27 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2H3YB93 | 2e-32 | A0A2H3YB93_PHODC; protein RADIALIS-like 3 | ||||
STRING | XP_008795931.1 | 4e-33 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-22 | RAD-like 6 |