PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_25245

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

Nin-like

Protein Properties

Length: 877aa MW: 96654.8 Da PI: 6.7082

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_25245	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	4e-29	578	628	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l+kyF++++kdAAk+Lgvc T+LKriCRq+GI+RWP+Rkik++ PEQU_25245 578 EKHISLNVLQKYFAGSLKDAAKSLGVCSTTLKRICRQHGISRWPSRKIKKV 628 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.063	567	648	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-25	581	628	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.92E-21	773	865	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-21	781	861	No hit	No description
PROSITE profile	PS51745	21.326	782	864	IPR000270	PB1 domain
SMART	SM00666	5.0E-18	782	864	IPR000270	PB1 domain
Pfam	PF00564	2.1E-16	783	863	IPR000270	PB1 domain
CDD	cd06407	8.67E-30	784	863	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 877 aa Download sequence Send to blast
MDHQSAQGGR MAKNACGEGF MAMDCGAGSP ISEDLLNLSG LLNFDGFHES SSPLFSDLLS 60 SSFSYSSLHP MFGNSATLIS PSGLEQPRDS VLEDEGTSGD GDSRLREKLA AKNPVLQSEL 120 SPNSAEGDLD SVEKDLKRTS TVILKSIGNF TFSDRMLKVL SLLKLFSSGG GTLAQVWVPV 180 KQGDNYILST CEQPFLLDHV LAGYREVSRV FTFSAKDTPG MFPGVPGRVF ISGLPEWTSN 240 VHYYNKFEYL RVEHAISHQV RGSLAVPVFD LHQSKCCAVL ELVTMKEKSN FDIEMENVCR 300 ALQAVDLGTT KACAHLQNLT KEQKSALSEI LDVLRAVCHT HKLPLALTWM PMACDNGTSD 360 KSVAGRQYLK ESMLCIQESA CYVNDSQMLG FLQACAEHYL AKGQGIVGKA LLSTHPIFSP 420 DVKGHDIGEY PLVHHTRKFG LQAAVAIRLR SNYTGDDDFV LEFFLPVNCK GSVEQQHLLK 480 KISVTMQGIC KSLRVVLDTE VNRPDFCEVD TANFKVRSSL SSEILGRFSH PMSERNLQIS 540 ERNIEVADAL SQDQNMEYDE QAECGSQKQT DKKRSTSEKH ISLNVLQKYF AGSLKDAAKS 600 LGVCSTTLKR ICRQHGISRW PSRKIKKVNH SLKKIQSVIN SVQGVEGTLQ YDPKTGWLTA 660 AVAREKLTPA TQTSISMRGN VPFSSSPQCG AGQSDERLEV QRANVPNACF TKSKVTFSVP 720 MSSDSAAEED EMDVKIDLNV GREHSRSSFS SMTDSSSEST SCRPTLIKSS KNESLVSHKG 780 PVYTVKATYK SDTVRFKLLP SMGLMHLYEE VGMRFKLSMG TFQLKYMDDE EEWVMLTGES 840 DLQECIEVME SISSQSMRLQ VRDAPRTVSA QPAAAAC

Sequence ? help Back to Top

Protein Sequence Length: 877 aa Download sequence Send to blast

MDHQSAQGGR MAKNACGEGF MAMDCGAGSP ISEDLLNLSG LLNFDGFHES SSPLFSDLLS  60
SSFSYSSLHP MFGNSATLIS PSGLEQPRDS VLEDEGTSGD GDSRLREKLA AKNPVLQSEL  120
SPNSAEGDLD SVEKDLKRTS TVILKSIGNF TFSDRMLKVL SLLKLFSSGG GTLAQVWVPV  180
KQGDNYILST CEQPFLLDHV LAGYREVSRV FTFSAKDTPG MFPGVPGRVF ISGLPEWTSN  240
VHYYNKFEYL RVEHAISHQV RGSLAVPVFD LHQSKCCAVL ELVTMKEKSN FDIEMENVCR  300
ALQAVDLGTT KACAHLQNLT KEQKSALSEI LDVLRAVCHT HKLPLALTWM PMACDNGTSD  360
KSVAGRQYLK ESMLCIQESA CYVNDSQMLG FLQACAEHYL AKGQGIVGKA LLSTHPIFSP  420
DVKGHDIGEY PLVHHTRKFG LQAAVAIRLR SNYTGDDDFV LEFFLPVNCK GSVEQQHLLK  480
KISVTMQGIC KSLRVVLDTE VNRPDFCEVD TANFKVRSSL SSEILGRFSH PMSERNLQIS  540
ERNIEVADAL SQDQNMEYDE QAECGSQKQT DKKRSTSEKH ISLNVLQKYF AGSLKDAAKS  600
LGVCSTTLKR ICRQHGISRW PSRKIKKVNH SLKKIQSVIN SVQGVEGTLQ YDPKTGWLTA  660
AVAREKLTPA TQTSISMRGN VPFSSSPQCG AGQSDERLEV QRANVPNACF TKSKVTFSVP  720
MSSDSAAEED EMDVKIDLNV GREHSRSSFS SMTDSSSEST SCRPTLIKSS KNESLVSHKG  780
PVYTVKATYK SDTVRFKLLP SMGLMHLYEE VGMRFKLSMG TFQLKYMDDE EEWVMLTGES  840
DLQECIEVME SISSQSMRLQ VRDAPRTVSA QPAAAAC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020593493.1	0.0	LOW QUALITY PROTEIN: protein NLP2-like
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2I0AL08	0.0	A0A2I0AL08_9ASPA; Protein NLP2
STRING	XP_010026047.1	0.0	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]