PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_24832 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | SBP | ||||||||
Protein Properties | Length: 131aa MW: 14807.8 Da PI: 9.866 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 136 | 1.1e-42 | 23 | 98 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v+gC adls+++eyh+rhkvCevhsk+pvv+v g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+ PEQU_24832 23 CSVDGCVADLSKCREYHKRHKVCEVHSKTPVVVVGGREQRFCQQCSRFHSLAEFDEGKRSCRKRLDGHNRRRRKPP 98 *************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-34 | 20 | 84 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.342 | 20 | 97 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.75E-39 | 21 | 98 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.1E-32 | 23 | 96 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MVTSSGASRR ARVPNSTGYI ASCSVDGCVA DLSKCREYHK RHKVCEVHSK TPVVVVGGRE 60 QRFCQQCSRF HSLAEFDEGK RSCRKRLDGH NRRRRKPPQL DAQSSGNSLT NPHGFLLYLK 120 LEYELSIILT D |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-30 | 23 | 96 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 96 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00555 | DAP | Transfer from AT5G50570 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589900.1 | 2e-78 | squamosa promoter-binding-like protein 16 isoform X1 | ||||
Refseq | XP_020589901.1 | 8e-79 | squamosa promoter-binding-like protein 16 isoform X2 | ||||
Swissprot | Q0J0K1 | 3e-43 | SPL18_ORYSJ; Squamosa promoter-binding-like protein 18 | ||||
Swissprot | Q2R3Y1 | 4e-44 | SPL19_ORYSJ; Putative squamosa promoter-binding-like protein 19 | ||||
TrEMBL | A0A2H4H2B1 | 7e-66 | A0A2H4H2B1_9ASPA; Squamosa promoter-binding-like protein 1 (Fragment) | ||||
STRING | XP_008806431.1 | 2e-51 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 1e-43 | SBP family protein |