PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_24260
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 494aa    MW: 55599.3 Da    PI: 4.7455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_24260genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.3e-12269312755
                 HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +Er+RR+++N+++  Lr l+P+      +K++ a+iL  A+eY+ +Lq
  PEQU_24260 269 LAERKRRKKLNDRLYALRALVPNI-----TKMDRASILGDAIEYVMELQ 312
                 68*********************7.....7****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.2E-136157IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000831.48E-13261316No hitNo description
PROSITE profilePS5088815.796262311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-17265327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-16268317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-17269325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.7E-10269312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.33E-7393469No hitNo description
Gene3DG3DSA:3.30.70.2603.0E-4394465No hitNo description
PROSITE profilePS516718.956396471IPR002912ACT domain
CDDcd048731.89E-5397460No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MKAMVERLRP LVGANAWDYC ILWMLSQDNR LLEWMGCCCG GRERGESYQS GDYPTDQPCR  60
DIATSPHQRT RACDELSEFP SSIPMDDCLA YLPSFRNYAE TLVSNQFSWQ TNVSDSFGSL  120
EKEAARTRVL IPIPAGGLVE LFAWKHMVED QQSINFVVSQ CHPSPYESIT RAAASCQELE  180
PLNDCHYPPP AADHQTLPWD ITCDQFRHYN SSLIGAYEQA PLMISCAENS EGVEVEKDLG  240
LDGSDQGEDE DEQGRAGRGG KRHHSKNLLA ERKRRKKLND RLYALRALVP NITKMDRASI  300
LGDAIEYVME LQKQIKDLQK ELEEATPDGD DVAKQLGSNN NSNCQLEVSN PNDDSLNSAK  360
MVPSTLATTT KTPTDDKGPQ MEPLVEVRPV EGNEFFLKVF CEQRPGGFVR LMEAMSSLGL  420
EVTNANVTTF KALVLNVFRV EKRNSEGVQA EQLRDSLLEV TREAGGEWME IVSNDIMKDF  480
HHHHGRLNDQ YHLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-142703151257Transcription factor MYC2
5gnj_B5e-142703151257Transcription factor MYC2
5gnj_E5e-142703151257Transcription factor MYC2
5gnj_F5e-142703151257Transcription factor MYC2
5gnj_G5e-142703151257Transcription factor MYC2
5gnj_I5e-142703151257Transcription factor MYC2
5gnj_M5e-142703151257Transcription factor MYC2
5gnj_N5e-142703151257Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270277ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020591023.10.0transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_020591024.10.0transcription factor ABORTED MICROSPORES isoform X1
RefseqXP_020591025.10.0transcription factor ABORTED MICROSPORES isoform X1
TrEMBLA0A2I0XCM60.0A0A2I0XCM6_9ASPA; Transcription factor ABORTED MICROSPORES
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55303449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-59bHLH family protein