PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_23740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 152aa MW: 17184.7 Da PI: 9.8268 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 69.1 | 8.4e-22 | 54 | 117 | 1 | 64 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 +W +qe+++Li++r e+e+++ ++++k+ We+v+ +mre+g++r+++qCk+kw+nl +ryk PEQU_23740 54 QWGQQETRELIAIRAELERDFTLSRRNKTVWEAVALRMREKGYRRTSEQCKCKWKNLVNRYKGS 117 7************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.735 | 47 | 111 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.001 | 51 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 4.17E-26 | 53 | 117 | No hit | No description |
Pfam | PF13837 | 1.1E-18 | 53 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.8E-4 | 54 | 112 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MGGGGEGDPL GGRMGMMPGF QLQMMPVAAE MIGTSGSAVG GGGGHRGREE KMPQWGQQET 60 RELIAIRAEL ERDFTLSRRN KTVWEAVALR MREKGYRRTS EQCKCKWKNL VNRYKGSQPQ 120 VLYTMGFNKA LGRPEDCIFF RSFYNIDFDH LL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020685442.1 | 3e-49 | trihelix transcription factor GT-3b | ||||
Swissprot | Q9SDW0 | 5e-21 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A0A2I0WIR0 | 4e-47 | A0A2I0WIR0_9ASPA; Trihelix transcription factor GT-3b | ||||
STRING | GSMUA_Achr7P04840_001 | 8e-40 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 1e-22 | Trihelix family protein |