PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_23348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 310aa MW: 34722 Da PI: 8.2695 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 94 | 3e-29 | 46 | 167 | 3 | 112 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaesssssasnsssg......... 88 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ ++ +i +l+ +++++ + + +sssssa n+ ++ PEQU_23348 46 GGKDRHSKVSTIRGLRDRRVRLSVPTAIKLYDLQDKLGLNQPSKVVDWLLNVSQNEIEKLPPLPFIPGNLIrfpqSLASSSSSAINDDITenvnnydhr 144 78*************************************************************666664333222222222222222222333344443 PP TCP 89 ........kaaksaakskksqksaasalnlak 112 + ++ +++ + +++k PEQU_23348 145 apkfnvfsN---------NAVVDQNVTAQFQK 167 334444442.........22222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.2E-29 | 47 | 171 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.776 | 47 | 105 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MIKDTREKES LHKQHGDTNE AKKTCTRLWP PTLGNPRVVR VSQTFGGKDR HSKVSTIRGL 60 RDRRVRLSVP TAIKLYDLQD KLGLNQPSKV VDWLLNVSQN EIEKLPPLPF IPGNLIRFPQ 120 SLASSSSSAI NDDITENVNN YDHRAPKFNV FSNNAVVDQN VTAQFQKSSA HLNNSDIFLK 180 NRSLRDITME SEIDQKGGVG KYDQLDEIDS TTMAYSFFQQ FESNVPQAEV TQGFLFASSG 240 SPSLISLMPA GSQALVPSVF SLYENNHCNF QMPTTFAQLL PLNSSRTSLH AGNAKIHFHK 300 SETHIDINDH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-17 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-17 | 52 | 106 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583847.1 | 0.0 | uncharacterized protein LOC110026953 | ||||
TrEMBL | A0A1D6ZNH5 | 0.0 | A0A1D6ZNH5_PHAEQ; TCP transcription factor |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-39 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |