PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_23086 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 54aa MW: 6040.29 Da PI: 11.0128 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66.5 | 2.6e-21 | 8 | 52 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+ s r v fskRr+g++KKAeEL +LC+a+vav++fs+ g+ PEQU_23086 8 KLIESASARMVCFSKRRKGLFKKAEELLILCGAKVAVLVFSQAGR 52 569***************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-18 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-20 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.483 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 2 | 22 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-23 | 10 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-17 | 37 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 54 aa Download sequence Send to blast |
GRKKLENKLI ESASARMVCF SKRRKGLFKK AEELLILCGA KVAVLVFSQA GRPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL71 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. | |||||
UniProt | MADS-box transcription factor that acts with AGL42 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1. {ECO:0000269|PubMed:21609362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020591382.1 | 4e-25 | MADS-box transcription factor 23-like | ||||
Swissprot | Q9FLH5 | 2e-14 | AGL72_ARATH; MADS-box protein AGL72 | ||||
Swissprot | Q9LT93 | 1e-14 | AGL71_ARATH; MADS-box protein AGL71 | ||||
TrEMBL | A0A2I0X9C1 | 4e-22 | A0A2I0X9C1_9ASPA; MADS-box protein ZMM17 | ||||
TrEMBL | A0A2I0X9D2 | 7e-21 | A0A2I0X9D2_9ASPA; Floral homeotic protein GLOBOSA | ||||
STRING | XP_008788342.1 | 1e-17 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP129 | 38 | 398 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51870.1 | 6e-17 | AGAMOUS-like 71 |
Publications ? help Back to Top | |||
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