PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_22681 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 198aa MW: 22139 Da PI: 9.5726 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.9 | 4e-12 | 105 | 149 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ ++ + ++lG+g+W I+r + +Rt+ q+ s+ qky PEQU_22681 105 PWSEEEHRAFLAGLEKLGKGDWCGISRNFVITRTPTQVASHAQKY 149 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50158 | 8.944 | 3 | 20 | IPR001878 | Zinc finger, CCHC-type |
Gene3D | G3DSA:4.10.60.10 | 5.4E-4 | 4 | 20 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS51294 | 16.712 | 98 | 154 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.99E-16 | 99 | 155 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.1E-17 | 102 | 153 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.7E-11 | 102 | 152 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-10 | 102 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.56E-10 | 105 | 150 | No hit | No description |
Pfam | PF00249 | 2.6E-10 | 105 | 149 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 198 aa Download sequence Send to blast |
MGRRCSRCGN NGHNSRTCTS SRNMVGVGEL RLFGVQIQLA STSTRNKSFS LDCLCPSGYS 60 ASASSSSSSS SSSIFCIDEG VEKFSNGYLS DGLLVRVQEK RKGVPWSEEE HRAFLAGLEK 120 LGKGDWCGIS RNFVITRTPT QVASHAQKYF LRQNSPVKKK RRSSLFDEVI NTQTCFYFFL 180 FPFWLMQGAF TREAESVY |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 157 | 161 | KKKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020592390.1 | 1e-120 | transcription factor MYBS3-like | ||||
Swissprot | Q7XC57 | 9e-45 | MYBS3_ORYSJ; Transcription factor MYBS3 | ||||
TrEMBL | A0A2I0WXY9 | 4e-78 | A0A2I0WXY9_9ASPA; Transcription factor MYB1R1 | ||||
STRING | XP_008798617.1 | 1e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4231 | 38 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G56840.1 | 5e-50 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|