PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_22352

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

bHLH

Protein Properties

Length: 343aa MW: 37713.2 Da PI: 7.0853

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_22352	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.9	0.00042	211	249	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq PEQU_22352 211 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 249 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.649	199	248	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.43E-6	209	253	No hit	No description
SuperFamily	SSF47459	2.36E-10	209	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.9E-8	209	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MNKSGVFQGS LLQQQMVGGS PSWWSMNHLR PNNGETSPLL HPHALQQHLQ PSNSLSLNSL 60 YESQELPQSW SQLLLGGLVG EEERYGLGTP FKKTLNWEEQ LMHQSQGAYT IDVKQENSES 120 LYSHGSTSEE IQLATASRAS WSQILPVSSP RSCVTSSLSS NMLDFSNSKA ERKHLPPDHS 180 SECNSIETGA VSKKARVHGS SSSQSTTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE 240 AIGYIRFLQS QIEALSSPYL NIASRKTRLP AQGERSCIFP EDPGQLLNDN CMKRGPVDQD 300 GNVEIKKDLR SRGLCLVPVS CTLHVGSDDG VDYWSPSIGG CFR

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MNKSGVFQGS LLQQQMVGGS PSWWSMNHLR PNNGETSPLL HPHALQQHLQ PSNSLSLNSL  60
YESQELPQSW SQLLLGGLVG EEERYGLGTP FKKTLNWEEQ LMHQSQGAYT IDVKQENSES  120
LYSHGSTSEE IQLATASRAS WSQILPVSSP RSCVTSSLSS NMLDFSNSKA ERKHLPPDHS  180
SECNSIETGA VSKKARVHGS SSSQSTTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE  240
AIGYIRFLQS QIEALSSPYL NIASRKTRLP AQGERSCIFP EDPGQLLNDN CMKRGPVDQD  300
GNVEIKKDLR SRGLCLVPVS CTLHVGSDDG VDYWSPSIGG CFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020581780.1	0.0	transcription factor bHLH68-like
Swissprot	Q8S3D1	7e-79	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A2I0VVU7	0.0	A0A2I0VVU7_9ASPA; Transcription factor bHLH68
STRING	XP_008783244.1	1e-151	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2167	8	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	3e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]