PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_21454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | TCP | ||||||||
Protein Properties | Length: 363aa MW: 40087.9 Da PI: 8.8607 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.8 | 6.6e-37 | 42 | 171 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaakskks 100 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LGfd++sk+ieWL+++a ai el+++ ss + + + ++++ ++ a+++ +s+ s PEQU_21454 42 SGGKDRHSKVFTSKGLRDRRVRLSVSTAIEFYDLQDRLGFDQPSKAIEWLIKAASSAIAELPSLVSSFP----ELAGGRMNAETGKMIAEAEPGCSSTS 136 689*************************************************************33333....22333333334555777788899999 PP TCP 101 qksaasalnlak.esrakarararertrekmrikn 134 ++s+ s+l+l++ e r kar+rar rt++++ k+ PEQU_21454 137 ETSKGSVLSLSRsEIRIKARERARLRTAKDKEEKE 171 999999******99*************99988775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.4E-35 | 43 | 192 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.314 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
MEVKRQPSKR SRLSNADKGD EKARTMILSH PSARIFRVSR ASGGKDRHSK VFTSKGLRDR 60 RVRLSVSTAI EFYDLQDRLG FDQPSKAIEW LIKAASSAIA ELPSLVSSFP ELAGGRMNAE 120 TGKMIAEAEP GCSSTSETSK GSVLSLSRSE IRIKARERAR LRTAKDKEEK EEDDGDHLDA 180 TEQHPQNMNQ SSFTQLLIAG SSSERTQIQE ILRPSTVTAD YFGQAGFFAR TQLPSSFCST 240 KGQIFGSYSP VGMMPYNIAA ATGDNSDMQQ FSFINEHMDY NLNFPGFHRG TLQSNPSLHS 300 PFSPSSSSMD VQNVPFFFGA AAPSTEAHFY SICDGRLQLS KEPITPFCLD GYRPPDLKGK 360 RNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 8e-23 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 8e-23 | 49 | 103 | 1 | 55 | Putative transcription factor PCF6 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00006 | PBM | Transfer from 493022 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ439605 | 0.0 | HQ439605.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP3 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574888.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020574889.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020574891.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020574892.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020574893.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020574894.1 | 0.0 | transcription factor TCP2-like | ||||
Swissprot | Q93V43 | 1e-56 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A1D6ZNH3 | 0.0 | A0A1D6ZNH3_PHAEQ; TCP transcription factor | ||||
STRING | XP_008784856.1 | 1e-105 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18390.2 | 1e-55 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
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