PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_21195
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C2H2
Protein Properties Length: 1398aa    MW: 157409 Da    PI: 7.6025
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_21195genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.0008712881313123
                  EEET..TTTEEESSHHHHHHHHHH.T CS
     zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                  ++C+   C+++F+++s L+ H ++ +
  PEQU_21195 1288 FECNieGCHMVFRTRSKLRLHKQNrC 1313
                  89*******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.4E-131353IPR003349JmjN domain
PROSITE profilePS5118313.3981455IPR003349JmjN domain
PfamPF023752.1E-131548IPR003349JmjN domain
SMARTSM005585.3E-16212403IPR003347JmjC domain
PROSITE profilePS5118422.033212403IPR003347JmjC domain
SuperFamilySSF511975.49E-10224289No hitNo description
PfamPF023732.7E-16242293IPR003347JmjC domain
SuperFamilySSF511975.49E-10342399No hitNo description
SMARTSM003558.412881310IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.86113111340IPR007087Zinc finger, C2H2
SMARTSM003551013111335IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013131335IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-613151341IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.39E-913291369No hitNo description
PROSITE profilePS5015712.40413411370IPR007087Zinc finger, C2H2
SMARTSM003550.002913411365IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.0E-1013421365IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028013431365IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-813591393No hitNo description
Gene3DG3DSA:3.30.160.604.8E-913661393IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.6613711398IPR007087Zinc finger, C2H2
SMARTSM003550.7813711397IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013731397IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0048577Biological Processnegative regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1398 aa     Download sequence    Send to blast
EGDVPLWLKN LPMAPEYRPT ETEFADPIAF ISRIEREAAA FGICKVIPPL PKPSKRFVLS  60
NLNRSLSKSP ELGDAAAGTA GPSPESAVFT TRHQELGSRR ARPAALPKQV WQSGDVYTLE  120
QFEGKSKAFA RSHLGGFKEV TPLLVESLFW KAVMEKPINI EYANDVPGSG FAVPEEPFRL  180
TSSSDNGQPK RSWGSCGDKE GWKGTSGWKL SNSRWNLQVI ARSPGSLTRF MPDDVPGVTS  240
PMVYIGMLFS WFAWHVEDHE LHSMNYLHMG SPKTWYAVPQ DHAATLEEIV RCHGYGGSVD  300
RLVVAPPHSC LMVTKAQVEA CMGGMGIVHN KFHSIIFTNG FELLCWHFMY SFIFMWHQFF  360
LALFFFSVLI WICGYSGFNC GEAANFATPE WLKVAKEAAI RRAAMNHLPM LSHQQLLYIL  420
TMSFVSRIPR TLISGVRSSR LKDRKKEERE ILVKKAFLTD MMSENYLLCV LLEKKSISPI  480
LWEPYMLPAS CAVSQCCPSI SLKAQTFDNQ NGCCIYNQQK EISTHEEISK KVDDFCVKKP  540
FDEAIALNAC PDILLTEPYK DQIHLDLPAS DVEALEIAED EDELPVGLSV DSGSLACVAC  600
GTLGYPFMAV IQPSVKAAKR IFSITCEEPN EKSDKSWCLI SPPCVQNDPC NFTTGNLDPS  660
WQLFPKSSET MQHFREHDMP LPMDNGSSLN YFSMDSLQNK GETLDATDSQ TKSNRCVFDS  720
SANTFCSSGL HPCGNVKEFE GILGTKNGSG PFFEGDEESH VKGNVGVPKW DVSNVLLRPR  780
VFCLNHAIEV EELLQNKGGG LMRITCHSDY LKFKAYAASI AEEMGTELHL KDVPLENASQ  840
EDLNLINISI DEEEHQEDGK DWTSKLGVNL RYSVKLRKHS ASPQEQLPSA LQRMFSNPST  900
VSVVSNLKWL CRKSRTPAKP LGINVVKPRI SATVERGVQT FKVAGNDNIK AIQVYQSRKK  960
KTNYLPSDDH NHPGKELSSC NQNSKFVRSE NVENLFTVPI SMIENHEISQ NSIEKRNRSP  1020
SVADISTTNL SCFHLPAKPS TESHGVNDRC FSGLNGLNNT TFVSVPVNYQ SNQVYNNAFT  1080
SISSVPYEEK NAGESSANFD GGRHGNLELQ DNTVIRESRS SETNVVIALC EGERCGIIST  1140
EGEMDKTANR AVRESMLEGE LIHICSKTPL LMHECAVDNC KPQHEPCTTK AADFFPFALN  1200
IKSYVRRKNK RKWEVEQRVS EEHIEPENTA TVQNKLKIYN KTEGQQTSNG FARSPCEGLR  1260
PRKGKLESFV AEPKISDTRK QSEVKDAFEC NIEGCHMVFR TRSKLRLHKQ NRCTYDECRK  1320
RFSHHKYAMR HQRVHKDERP FRCSWRGCKM SFKWEWARTE HLRLHTGERP YKCFVAGCGL  1380
SFRFVSDFSR HRRKSGHF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A6e-4814742417Transcription factor jumonji (Jmj) family protein
6ip4_A6e-4814742417Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112051211RRKNKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573029.10.0probable lysine-specific demethylase ELF6 isoform X1
RefseqXP_020573030.10.0probable lysine-specific demethylase ELF6 isoform X2
TrEMBLA0A2I0VVB70.0A0A2I0VVB7_9ASPA; Putative lysine-specific demethylase ELF6
STRINGAC149475.2_FGP0050.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99393437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-168C2H2 family protein