PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_21110

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 417aa MW: 47263.3 Da PI: 7.3425

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_21110	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.1	6.3e-35	47	190	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgy 82 lp+G++F+Ptd+el+ e+L++kv+ + ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + + PEQU_21110 47 LPAGVKFDPTDQELI-EHLEAKVSVQGlirshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtetdirRGETR 143 799**********.99**99987776553333333766646******.555666799**************75666554333778 PP NAM 83 WkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l PEQU_21110 144 WHKTGKTRAVMA-NGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 190 ********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-37	42	209	IPR003441	NAC domain
PROSITE profile	PS51005	32.704	47	209	IPR003441	NAC domain
Pfam	PF02365	6.5E-16	48	190	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MSRSHIVSSS SSAILIDAKL EEHQLRGSKH CPSCGHKLES KPDWFGLPAG VKFDPTDQEL 60 IEHLEAKVSV QGLIRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA 120 YTTGTRKRRK IQTETDIRRG ETRWHKTGKT RAVMANGRQK GCKKILVLYT NFGKHRKPEK 180 TNWVMHQYHL GEMEEEKEGE LVVSKIFYQT QPRQCGTVGA GETIGILNCS SSKQAVDGAG 240 VVGVYGGVEQ LQKEEMSRDV EFSFDPFRKG FDEVRERRER YYELKVFTCL FSHEQVGLGE 300 KASNCLSEAS ISREEGAFHI NRSTNSISAI ISPASTIQHA SMILEDPYHV SRLLFQSDKF 360 QQQQQKLVER PAGAGLEEMI MACTSTNIKP ETSLPHPQEP EWLKYSYWSP DSHDHHE

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MSRSHIVSSS SSAILIDAKL EEHQLRGSKH CPSCGHKLES KPDWFGLPAG VKFDPTDQEL  60
IEHLEAKVSV QGLIRSHPLI DEFIPTIEGE DGICYTHPEK LPGVTRDGLS KHFFHRPSKA  120
YTTGTRKRRK IQTETDIRRG ETRWHKTGKT RAVMANGRQK GCKKILVLYT NFGKHRKPEK  180
TNWVMHQYHL GEMEEEKEGE LVVSKIFYQT QPRQCGTVGA GETIGILNCS SSKQAVDGAG  240
VVGVYGGVEQ LQKEEMSRDV EFSFDPFRKG FDEVRERRER YYELKVFTCL FSHEQVGLGE  300
KASNCLSEAS ISREEGAFHI NRSTNSISAI ISPASTIQHA SMILEDPYHV SRLLFQSDKF  360
QQQQQKLVER PAGAGLEEMI MACTSTNIKP ETSLPHPQEP EWLKYSYWSP DSHDHHE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00460	DAP	Transfer from AT4G29230	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020588135.1	0.0	uncharacterized protein LOC110029961 isoform X2
Swissprot	Q9M0F8	1e-124	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A2I0WZH6	0.0	A0A2I0WZH6_9ASPA; NAC domain-containing protein 8
STRING	VIT_11s0016g02880.t01	1e-168	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1453	38	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	1e-116	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]