PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_21024 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 288aa MW: 33917.8 Da PI: 6.2004 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 70.8 | 2.6e-22 | 2 | 99 | 1 | 86 |
trihelix 1 rWtkqevlaLiearr...........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +Wt+++v++L++++ e r r+ +kk++W++vsk m+e+g+ +sp+qC++k+++lnkryk+++e+ +++ t+ ++++ +++++++ PEQU_21024 2 KWTDEMVRLLVTVVAfindegtpdpvEAAARRRSILQKKGKWKAVSKLMKEKGCFVSPQQCEDKFNDLNKRYKRLNEILGRGtTCMVVENPALLESMT 99 7**************666666666433333333345**********************************************7799999999999996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-18 | 2 | 125 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MKWTDEMVRL LVTVVAFIND EGTPDPVEAA ARRRSILQKK GKWKAVSKLM KEKGCFVSPQ 60 QCEDKFNDLN KRYKRLNEIL GRGTTCMVVE NPALLESMTY VSAKMKEDVK KILSSKHLFY 120 REMCAYHNGQ TIPDSHIFGL KSEILACSGI LPEVGQDSED GDDDDEKSEE YGQLDIEEFL 180 AEIDLVFQDN NRTASEKLDW FQRRALQIKQ ERLVILSDAL ELKKRNFKWQ RFRSKKDREM 240 EKMRLENERL MKENERMILE LRQKELEFTS WRSREASDPA AYRMDMEH |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020588093.1 | 0.0 | uncharacterized protein LOC110029937 | ||||
TrEMBL | A0A2I0VYR1 | 1e-170 | A0A2I0VYR1_9ASPA; Uncharacterized protein | ||||
STRING | XP_010246931.1 | 3e-98 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19470 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 3e-59 | sequence-specific DNA binding transcription factors |