PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_20952
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family TCP
Protein Properties Length: 277aa    MW: 30766 Da    PI: 8.1141
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_20952genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.93.8e-3051149289
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasnsssg.. 88 
                  g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a ++i +l+ +          s           ++ss+++++++  
  PEQU_20952  51 FGGKDRHSKVSTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAARQEINKLPPLdfqnfihfhqS----------FDQSSKAKNNNHdq 139
                 689*************************************************************44433333331..........11111111111112 PP

         TCP  89 .........k 89 
                          +
  PEQU_20952 140 clnferqrqA 149
                 2223222211 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.8E-2953149IPR005333Transcription factor, TCP
PROSITE profilePS5136928.50353111IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVTDTREKDQ FLSTDNTEDN STINNKTATS SNSRLWSALI DPRIVRVSKA FGGKDRHSKV  60
STIRGLRDRR VRLSVPTAIQ LYDLQDRLGL NQPSKVVDWL LNAARQEINK LPPLDFQNFI  120
HFHQSFDQSS KAKNNNHDQC LNFERQRQAA SPSAALIYQD VGVYNAESQF HQDHNLLYDN  180
NTRGGGDQAL GLIGNGGFPH ASYYHCPEQS NRSTCFTQFG IISSQVDAAP AALFSSYMTS  240
TVSSELDGIS AQQNLPPNSS AVFKNSFHPG SPKATPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1858112155Putative transcription factor PCF6
5zkt_B1e-1858112155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583811.10.0transcription factor PCF6-like
RefseqXP_020583812.10.0transcription factor PCF6-like
RefseqXP_020583813.10.0transcription factor PCF6-like
RefseqXP_020583814.10.0transcription factor PCF6-like
RefseqXP_020583815.10.0transcription factor PCF6-like
RefseqXP_020583816.10.0transcription factor PCF6-like
TrEMBLA0A1D6ZNH60.0A0A1D6ZNH6_PHAEQ; TCP transcription factor
STRINGXP_008805146.17e-48(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.13e-43plastid transcription factor 1