PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_20559 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 438aa MW: 50014.5 Da PI: 7.1043 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 71.6 | 1.4e-22 | 127 | 223 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 +Wt+ +v++Li+a+++++e+ +++ +kk++W+ +sk+++ergf +sp+qC++k+++lnkryk+++++ +++ +++++++ +++d + PEQU_20559 127 KWTDLMVRLLITAVSYLGEDALSECtssgrrkaslvQKKGKWKLISKVLAERGFYVSPQQCEDKFNDLNKRYKRLTDILGRGtSCKVVENPALLDLM 223 7**************999888877666778888999**********************************************569999999888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.7E-21 | 125 | 250 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MDANLASGNM IPGASYGVID LQGSMHMHHH QNPNASFHHH LQQSGHCQRQ GSLMHPPMHD 60 VFPLQINHMK DCDQQLVQPM MDYDKKGECC KNSASDDDEL SLNTDDGVLC QNEAGKGNKG 120 SPWQRMKWTD LMVRLLITAV SYLGEDALSE CTSSGRRKAS LVQKKGKWKL ISKVLAERGF 180 YVSPQQCEDK FNDLNKRYKR LTDILGRGTS CKVVENPALL DLMSHIPDKA KDDVRKILSS 240 KHLFYEEMCS YHNGNRLNLP ANPALKRSLQ LAMMSKDDHE TKRGVNDELD VANHGDSEDG 300 EEDPEDNHRD IGGSCFHKRV KHGEEMSFTN SLGSQDFNRR TDPMAAHTDA SYALPEGPKA 360 AWLQMEMLRS RSIQLEEQSL HIQSQMLELE QQRLKWQRFS KKKDKELDKM RMENERIKLG 420 NERLSLDLKH KQLERGLN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583172.1 | 0.0 | uncharacterized protein LOC110026543 | ||||
TrEMBL | A0A2I0W3S0 | 0.0 | A0A2I0W3S0_9ASPA; Uncharacterized protein | ||||
STRING | XP_008781412.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2920 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21200.1 | 1e-130 | sequence-specific DNA binding transcription factors |