PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_20077 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 167aa MW: 19165.1 Da PI: 10.5226 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.1 | 2.3e-11 | 108 | 145 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk++gLt +qV++WF N R + PEQU_20077 108 FEHflHPYPTDTDKQMLAKQTGLTRNQVSNWFINARVR 145 664459******************************98 PP | |||||||
2 | BELL | 35.6 | 2.2e-12 | 2 | 43 | 30 | 72 |
BELL 30 lqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++t i sFe+v+gl++a+pY+slAlk +S++ r+Lk+ i++++ PEQU_20077 2 VETFITSFETVIGLNTATPYVSLALK-MSKNVRSLKNIISDHL 43 6899*********************8.9***********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07526 | 5.6E-6 | 2 | 40 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.487 | 86 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.65E-13 | 89 | 150 | No hit | No description |
SMART | SM00389 | 4.6E-11 | 89 | 153 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.51E-18 | 91 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-29 | 92 | 153 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.7E-20 | 106 | 145 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 167 aa Download sequence Send to blast |
EVETFITSFE TVIGLNTATP YVSLALKMSK NVRSLKNIIS DHLINLDMID AKQRLGKGKF 60 IGFGLTTTGD HACSQRRNSS FTFGQPQVWR PQRGLPERAV SVLRAWLFEH FLHPYPTDTD 120 KQMLAKQTGL TRNQVSNWFI NARVRLWKPM VEEIHNLEMH QLQKSVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-18 | 95 | 153 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-18 | 95 | 153 | 5 | 63 | Homeobox protein Meis2 |
4xrm_A | 3e-18 | 95 | 153 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 3e-18 | 95 | 153 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Required for specifying floral primordia and establishing early internode patterning events during inflorescence development. {ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:16741748}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020593830.1 | 1e-121 | LOW QUALITY PROTEIN: BEL1-like homeodomain protein 8 | ||||
Swissprot | Q9SJJ3 | 8e-54 | BLH8_ARATH; BEL1-like homeodomain protein 8 | ||||
TrEMBL | A0A2I0VUV3 | 6e-85 | A0A2I0VUV3_9ASPA; BEL1-like homeodomain protein 8 | ||||
STRING | XP_008811511.1 | 1e-68 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27990.1 | 3e-56 | BEL1-like homeodomain 8 |
Publications ? help Back to Top | |||
---|---|---|---|
|