PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_20067 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | AP2 | ||||||||
Protein Properties | Length: 248aa MW: 26841.2 Da PI: 7.7587 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 45.3 | 2.2e-14 | 25 | 75 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k++g PEQU_20067 25 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEVEAARAYDKAAIKFNG 75 89********.7******5553..2.26**********99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.56E-18 | 25 | 85 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.85E-27 | 25 | 85 | No hit | No description |
Pfam | PF00847 | 1.2E-9 | 25 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-32 | 26 | 89 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.45 | 26 | 83 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-17 | 26 | 84 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-7 | 27 | 38 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-7 | 65 | 85 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSNLTKEEFV HVLRRQSTGF PRGSSKYRGV TLHKCGRWEA RMGQFLGKKY VYLGLFDTEV 60 EAARAYDKAA IKFNGKDAVT NFDASIYADE LGCSPVQIEH NLDLSLGSSA SKISAMSPMD 120 EESSGCGSSG GGGGGGADQR FLTTCHEAIN ATTKLKLPDH ESRVNFHLGH HMEMLKHSSY 180 IQQQSPLPQP QPVGFPFIRH HLSHPSIYHQ YLGGNMAAAA RNGGDVHLSL GIDGGSSWAP 240 LHAAPPPP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020576148.1 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 | ||||
TrEMBL | A0A2K9Y519 | 1e-151 | A0A2K9Y519_9ASPA; AP2-3 | ||||
STRING | XP_008795894.1 | 5e-65 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-61 | AP2 family protein |