PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19568 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | C3H | ||||||||
Protein Properties | Length: 342aa MW: 36815.4 Da PI: 10.0058 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.2 | 2.3e-12 | 206 | 231 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt +C+ + ++G+C++G+rC+FaHg+ PEQU_19568 206 KTDICCSWEEFGFCRFGSRCQFAHGK 231 99**********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-14 | 200 | 235 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.58E-9 | 203 | 235 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.239 | 204 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.8E-5 | 204 | 231 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.1E-9 | 206 | 231 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MRGLSDSDET IVSLESSGAR SDIVKNARRR FSLSSPSPNA FLTPAFTAAA SAGGFSSNSP 60 LNIDSSLLRF KQSHLSRLRF SSSSSSSNDS PDSSSSSAAA VAARMQLQQL INPRSLSSSS 120 RRGSVNTPLS SIENLQSLLL SGRSSPAYLN YTTPMKFEIG DDVLVMDATV VSLPMPGRNR 180 QPLERISSSS SSSSVKNNPI DAKFLKTDIC CSWEEFGFCR FGSRCQFAHG KQELRGSPPP 240 WKLKPESGRE GSAVGSSADG DKYIRPEALD PAPAPPPAVC NSGSKKMKII KPEREPPVQK 300 PVPAFSWPPT KAEEAEIQKV LYGPGRRGRR LPVFVEVCSD SQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020588434.1 | 0.0 | mRNA decay activator protein ZFP36L3-like | ||||
TrEMBL | A0A2I0W6R6 | 1e-108 | A0A2I0W6R6_9ASPA; Zinc finger CCCH domain-containing protein 39 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP29445 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68200.2 | 5e-07 | C3H family protein |