PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_19547 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 372aa MW: 40543.5 Da PI: 9.3253 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.3 | 4.1e-32 | 42 | 176 | 3 | 114 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........................ssssasecea 75 g+kdrhsk+ T +g+RdRRvRls+++a++f+d+qd+LG+d++sk++eWL+++a +i++l+++ s+s+s c++ PEQU_19547 42 GGKDRHSKVWTVKGLRDRRVRLSVSTAIQFYDIQDRLGYDQPSKAVEWLIKAAADSIIDLPELvgpfpvpppvevparsmqtgaageqhFSQSKSTCSS 140 78***************************************************************9988888877776665544333321111122222 PP TCP 76 esssssasnsssg......kaaksaakskksqksaasalnlakes 114 +s+ +++ + ++k+++ +++nl+k+s PEQU_19547 141 ASE---------MskgsvlSSRFEGIGKEKDEDLIYQHQNLSKQS 176 222.........022244333333335555555555555555544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.9E-32 | 42 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.122 | 43 | 101 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 372 aa Download sequence Send to blast |
MKTEGIHSSK RLGRDKDGEG VGDVSPWQNA SSRIIRVSRV SGGKDRHSKV WTVKGLRDRR 60 VRLSVSTAIQ FYDIQDRLGY DQPSKAVEWL IKAAADSIID LPELVGPFPV PPPVEVPARS 120 MQTGAAGEQH FSQSKSTCSS ASEMSKGSVL SSRFEGIGKE KDEDLIYQHQ NLSKQSSFTV 180 LLKVGGSSNG SAAVAEVVDF SSGFKKKQMR PPLTNSYADY FRQVGIFGES PKIQQFEPGH 240 SSVLHFGSNP HMGIGMVTCN TGEHHDLKQF SFMQDHAIPV SALAPRGDYN LNVSISSGFT 300 GFSRGTLQSN SPYHCQLIHG SNLPCFLGNT LPISAAAGGS LENHFPGSFN ARLQFFPNEA 360 HWHPELKGKR QG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-23 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 1e-23 | 48 | 102 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HQ439603 | 0.0 | HQ439603.1 Phalaenopsis hybrid cultivar candidate developmental transcription factor TCP1 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020580520.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020580521.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020580522.1 | 0.0 | transcription factor TCP2-like | ||||
Refseq | XP_020580523.1 | 0.0 | transcription factor TCP2-like | ||||
TrEMBL | A0A1D6ZNH7 | 0.0 | A0A1D6ZNH7_PHAEQ; TCP transcription factor | ||||
STRING | XP_008784856.1 | 1e-91 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3094 | 32 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 2e-36 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |