PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19402 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ZF-HD | ||||||||
Protein Properties | Length: 258aa MW: 27695.9 Da PI: 7.126 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.4 | 1.5e-32 | 8 | 63 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57 +v Y+eClkNhAaslGgha+DGCgEfmps +++ +++++l+CaACgCHRnFHRr PEQU_19402 8 EVLYRECLKNHAASLGGHALDGCGEFMPSLTANpADPTSLRCAACGCHRNFHRRIA 63 689**************************99999*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.9E-28 | 9 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.7E-30 | 11 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.278 | 11 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-20 | 11 | 58 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.55E-14 | 150 | 211 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.9E-26 | 151 | 211 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-23 | 153 | 209 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
HVAHEADEVL YRECLKNHAA SLGGHALDGC GEFMPSLTAN PADPTSLRCA ACGCHRNFHR 60 RIAIRHRAAG AAASGDDSLE GEGERDGQED DGDDADVNDS RPRSPSPTPP TYFSSAPHML 120 LALSNGVRDG DSPAVARKSF AIPTPVVSLT PLRKRFRTKF SPEQKDRMLE LSERLGWRLQ 180 KRDEELVEKY CSEIGVGKGV FKVWMHNNKH HLFGHSSSRR GETMGGVSPP AAAAAALTGG 240 GAGVLKFDEN GNAMNGAC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-22 | 152 | 210 | 16 | 74 | ZF-HD homeobox family protein |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572796.1 | 0.0 | zinc-finger homeodomain protein 9-like | ||||
Swissprot | Q6Z528 | 2e-54 | ZHD10_ORYSJ; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | A0A2I0WDX8 | 1e-123 | A0A2I0WDX8_9ASPA; Transcription factor HB29 | ||||
STRING | XP_008784223.1 | 4e-74 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3646 | 33 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 2e-44 | homeobox protein 34 |