PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19346
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 345aa    MW: 39239.8 Da    PI: 8.7559
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19346genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.65.9e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l+ +++++G+g +W + ++++g++R++k+c++rw++yl
       PEQU_19346 14 KGPWSPEEDERLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                     79*********************************************97 PP

2Myb_DNA-binding31.25e-1069149246
                      SSS-HHHHHHHHHHHHHTTTT.....................................-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg.....................................tWktIartmgkgRtlkqcksrwqk 46 
                      g+++ eEd ++  +    G+                                      +W+ Ia++++ gRt++++k++w++
       PEQU_19346  69 GSFSDEEDNIICSLYIAIGSSfihqlpkfqcpkllniiayiflinsehnlyivllsylRWSIIAAHLP-GRTDNDIKNHWNT 149
                      6789999999999999999999999999999999999999999999999999999999**********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.765966IPR017930Myb domain
SMARTSM007172.3E-131364IPR001005SANT/Myb domain
SuperFamilySSF466893.82E-221466IPR009057Homeodomain-like
PfamPF002499.4E-171462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-241569IPR009057Homeodomain-like
CDDcd001675.23E-101662No hitNo description
PROSITE profilePS500907.78263151IPR017877Myb-like domain
SMARTSM007177.1E-767153IPR001005SANT/Myb domain
PfamPF002493.6E-769149IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-187088IPR009057Homeodomain-like
SuperFamilySSF466893.82E-22123152IPR009057Homeodomain-like
CDDcd001673.39E-6127151No hitNo description
Gene3DG3DSA:1.10.10.603.1E-18127155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDERLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGS FSDEEDNIIC SLYIAIGSSF IHQLPKFQCP KLLNIIAYIF LINSEHNLYI  120
VLLSYLRWSI IAAHLPGRTD NDIKNHWNTK LKTRLLGKQR KNQQHRRSCN LKQVIIKNKA  180
DKQSVSVTNE ANKAWLNQPI TAIPFHSTDQ ISDVNQSHTS ISKSQMKFAD LRFLCCGHGP  240
HQVQVAPSLK IPHAIYETPV NTMAYSSHDS ILSNGSPLTN EGPEFFEQGF NYTDNNSLMK  300
LESFDFVYGM SSLINESVNV SESIIWSEMN SFTLPVLPIN ESSYE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020572248.10.0transcription factor RAX3-like
TrEMBLA0A2I0WRT51e-177A0A2I0WRT5_9ASPA; Transcription factor RAX3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65790.19e-73myb domain protein 68