PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19346 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 345aa MW: 39239.8 Da PI: 8.7559 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.9e-18 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l+ +++++G+g +W + ++++g++R++k+c++rw++yl PEQU_19346 14 KGPWSPEEDERLKSYIEKHGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 31.2 | 5e-10 | 69 | 149 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT.....................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....................................tWktIartmgkgRtlkqcksrwqk 46 g+++ eEd ++ + G+ +W+ Ia++++ gRt++++k++w++ PEQU_19346 69 GSFSDEEDNIICSLYIAIGSSfihqlpkfqcpkllniiayiflinsehnlyivllsylRWSIIAAHLP-GRTDNDIKNHWNT 149 6789999999999999999999999999999999999999999999999999999999**********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 21.765 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 2.3E-13 | 13 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.82E-22 | 14 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.4E-17 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-24 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.23E-10 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 7.782 | 63 | 151 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.1E-7 | 67 | 153 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.6E-7 | 69 | 149 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 70 | 88 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.82E-22 | 123 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.39E-6 | 127 | 151 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-18 | 127 | 155 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDERLKSYIE KHGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIRHGS FSDEEDNIIC SLYIAIGSSF IHQLPKFQCP KLLNIIAYIF LINSEHNLYI 120 VLLSYLRWSI IAAHLPGRTD NDIKNHWNTK LKTRLLGKQR KNQQHRRSCN LKQVIIKNKA 180 DKQSVSVTNE ANKAWLNQPI TAIPFHSTDQ ISDVNQSHTS ISKSQMKFAD LRFLCCGHGP 240 HQVQVAPSLK IPHAIYETPV NTMAYSSHDS ILSNGSPLTN EGPEFFEQGF NYTDNNSLMK 300 LESFDFVYGM SSLINESVNV SESIIWSEMN SFTLPVLPIN ESSYE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020572248.1 | 0.0 | transcription factor RAX3-like | ||||
TrEMBL | A0A2I0WRT5 | 1e-177 | A0A2I0WRT5_9ASPA; Transcription factor RAX3 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65790.1 | 9e-73 | myb domain protein 68 |