PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_19290
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family bHLH
Protein Properties Length: 374aa    MW: 40756.4 Da    PI: 8.9267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_19290genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13301346655
                 HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +++Er RR ri +++ +L+el+P+     +k  + a++L +AveYIk+Lq
  PEQU_19290 301 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVEYIKDLQ 346
                 689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148295345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16298358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.34E-12299350No hitNo description
Gene3DG3DSA:4.10.280.102.4E-15300354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13301351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-10301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYGSSWAATF GHRKEESVFQ REQQMNSGLL RFSSAPSSLL GEACEGFLPV RPSSPETDSL  60
LARFLASSPR DEIRDKSAAA TEQNAAAEQN GGYSSISSQL LYQQQHQQQQ QQPPIAENAY  120
RVVSSMAMEV NQMKSGGANL IRQSSSPAGL MSHLNADSGY GLMGRIPGSN RNGMRGDFKG  180
QISFSSRQNS LSQISEMGSE GISGGGGSPE ESSNGQGFIP GYAVRSWEDS FLSDNLSASK  240
RAGDVVGRNQ TELQNGAGLT HHFSLPKTSS EMAAIEKLLH FQDSVPCKIR AKRGCATHPR  300
SIAERVRRTR ISERMRKLQE LVPNMDKQTN TADMLDLAVE YIKDLQKQVK SLSDVRATCT  360
CSVSRQKAYQ SQAS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5722164e-52KJ572216.1 Cymbidium ensifolium clone 13SSR62 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020582289.10.0transcription factor bHLH130-like
TrEMBLA0A2I0X3Y50.0A0A2I0X3Y5_9ASPA; Transcription factor bHLH130
STRINGXP_008776552.11e-135(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP188438103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.16e-64bHLH family protein