PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_19038 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 188aa MW: 20867 Da PI: 4.9006 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.3 | 2.9e-29 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+ ++ p++q +++ +v+k+FG++ ++ +l+++pee+r+++++sl++e++ r +Pv+Gavg+i++ +++l+ +++e+ PEQU_19038 2 SCNGCRVLRKGCSESCILRSCLqwiesPEAQGHATVFVAKFFGRAGLMAFLSSVPEENRPALFQSLLFESCGRSINPVSGAVGLIWTRKWNLCLEAVET 100 6*********************************************************************************************99998 PP DUF260 95 all 97 +l+ PEQU_19038 101 VLR 103 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.23 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-24 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCILR SCLQWIESPE AQGHATVFVA KFFGRAGLMA FLSSVPEENR 60 PALFQSLLFE SCGRSINPVS GAVGLIWTRK WNLCLEAVET VLRGGTIRPI SELPEVRAAD 120 DEEVYGMWPK SPLIGNLLSH VKCDLELYLR LPVTEEKEMP GTPSMNSSTT GDEDNCIDRE 180 QRVLNLFV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020593604.1 | 1e-137 | LOB domain-containing protein 39-like | ||||
Swissprot | Q9SZE8 | 3e-65 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2I0V7T9 | 1e-100 | A0A2I0V7T9_9ASPA; LOB domain-containing protein 39 | ||||
STRING | XP_008800648.1 | 1e-70 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-67 | LOB domain-containing protein 39 |