PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18939 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 17589.7 Da PI: 6.7907 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.2 | 1.2e-32 | 2 | 88 | 14 | 100 |
DUF260 14 kdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++C++apyf e+p+kf nvhk+FGasnv kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+++++l++el+++++e PEQU_18939 2 PSCIFAPYFHPEEPQKFINVHKVFGASNVAKLLNDLLPSQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRHIQRLQKELDATNAE 88 78*******************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.204 | 1 | 89 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.0E-32 | 2 | 86 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence Send to blast |
MPSCIFAPYF HPEEPQKFIN VHKVFGASNV AKLLNDLLPS QREDAVNSLA YEAEARIKDP 60 VYGCVGAISV LQRHIQRLQK ELDATNAELL RYAYAEQRSP NVSTMISPSL RVHYPHPPLP 120 AHGLWPSFVS YHHPHSQNDT CSNSSSGELN QRGEWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-51 | 1 | 96 | 23 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-51 | 1 | 96 | 23 | 118 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Positively regulated within the shoot apex by both ASYMMETRIC LEAVES 1 (AS1) and ASYMMETRIC LEAVES 2 (AS2/LBD6) and by KNAT1. {ECO:0000269|PubMed:11934861}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020588472.1 | 1e-114 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020594390.1 | 1e-114 | LOB domain-containing protein 25-like | ||||
Refseq | XP_020596227.1 | 1e-114 | LOB domain-containing protein 25-like | ||||
Swissprot | Q9FML4 | 4e-49 | LOB_ARATH; Protein LATERAL ORGAN BOUNDARIES | ||||
TrEMBL | A0A2I0X551 | 7e-77 | A0A2I0X551_9ASPA; Protein LATERAL ORGAN BOUNDARIES | ||||
STRING | Gorai.012G063800.1 | 9e-54 | (Gossypium raimondii) | ||||
STRING | XP_008795982.1 | 9e-54 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8813 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 2e-51 | LBD family protein |
Publications ? help Back to Top | |||
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