PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_18823

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

NAC

Protein Properties

Length: 313aa MW: 36523 Da PI: 6.2726

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_18823	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.8	6.8e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv++yL+kkv+++++++ +vik+vd+yk+ePwdL++k++ e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s k PEQU_18823 7 VPPGFRFHPTDEELVDYYLRKKVASRRIDV-DVIKDVDLYKIEPWDLQEKCDIgveEQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYS-K 103 69**************************.9***********963333233566**********************************.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++lvg++ktLvfykgrap+g+k dW+mheyrle PEQU_18823 104 DNLVGMRKTLVFYKGRAPNGQKLDWIMHEYRLE 136 99***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-61	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.071	7	156	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048759	Biological Process	xylem vessel member cell differentiation
GO:1901348	Biological Process	positive regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence Send to blast
MTSFSLVPPG FRFHPTDEEL VDYYLRKKVA SRRIDVDVIK DVDLYKIEPW DLQEKCDIGV 60 EEQNEWYFFS HKDKKYPTGT RTNRATTAGF WKATGRDKPI YSKDNLVGMR KTLVFYKGRA 120 PNGQKLDWIM HEYRLETDEN GPPQEEGWVV CRVFRKRIAS TQTLINHDSP SCHWYDESVP 180 FIPQFDSPKK LTYPNTETYH HPSLCYNCKP ELEVINHNHL LQNHSFLDLP HLESPKFPHF 240 INHETLQNNH QLQIVTDWRI FDKFVASQLS QDDVSKESDV CNLEKANDVA GKEIVAAECA 300 STSTSGEQID LWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	3e-51	7	157	15	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00136	DAP	Transfer from AT1G12260	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020583137.1	0.0	NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-120	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2I0VU59	0.0	A0A2I0VU59_9ASPA; NAC domain-containing protein 7
STRING	XP_008812366.1	1e-153	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-105	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]