PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18746 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 148aa MW: 17276.6 Da PI: 5.9229 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 175 | 7.9e-55 | 18 | 121 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 ql++fw++q ie++tdfknh+lPlarikki+kadedv+mi+aeaPv++++ace+filelt rsw haeenkrrtl+k+diaaa+trtd+fdflvdiv PEQU_18746 18 QLQMFWADQyreIEQTTDFKNHSLPLARIKKIMKADEDVRMIAAEAPVVFARACEMFILELTHRSWAHAEENKRRTLQKNDIAAAITRTDVFDFLVDIV 116 89*****99999*************************************************************************************** PP NF-YC 97 prdel 101 pr+e PEQU_18746 117 PREEG 121 **985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.84E-33 | 10 | 112 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-21 | 40 | 103 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.1E-37 | 41 | 118 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
YPQLYHHQQQ QQQQQQQQLQ MFWADQYREI EQTTDFKNHS LPLARIKKIM KADEDVRMIA 60 AEAPVVFARA CEMFILELTH RSWAHAEENK RRTLQKNDIA AAITRTDVFD FLVDIVPREE 120 GKEDIGPIHA LAAPAPAGDP LAYYYIQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-59 | 26 | 118 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 96 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX033762 | 2e-58 | JX033762.1 Dendrobium nobile microsatellite DNeSSR51 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586138.1 | 1e-107 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q8LCG7 | 4e-66 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A2I0WFV8 | 5e-83 | A0A2I0WFV8_9ASPA; Nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_008782988.1 | 3e-76 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3856 | 36 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 1e-62 | nuclear factor Y, subunit C3 |
Publications ? help Back to Top | |||
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