PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 239aa MW: 27182.9 Da PI: 9.953 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 38 | 84 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + +W eEde l+ +++ +G g+W+++ + g+ R + +c++rw++ PEQU_18431 38 KRPWRSEEDEALLSYIESHGLGNWNLVGKNSGLSRDGRSCRLRWLNQ 84 569*****************************************996 PP | |||||||
2 | Myb_DNA-binding | 29.5 | 1.7e-09 | 92 | 133 | 1 | 44 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 +++++++E ++ ++ +G+ W++Ia+ ++ gRt++ +k++ PEQU_18431 92 KLPFSKQEKYIIFSIHATFGNS-WSRIAKALP-GRTDNAIKNFV 133 689*****************99.*********.********985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.901 | 33 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.01E-25 | 37 | 131 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.6E-10 | 37 | 87 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-10 | 38 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.35E-9 | 40 | 83 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-17 | 40 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.395 | 90 | 141 | IPR017930 | Myb domain |
SMART | SM00717 | 8.7E-9 | 91 | 139 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-16 | 93 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.3E-8 | 93 | 132 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.82E-6 | 94 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MKGTFEKQRV FQPHFIGGNA VVQGVTELRL METRKREKRP WRSEEDEALL SYIESHGLGN 60 WNLVGKNSGL SRDGRSCRLR WLNQLQPGLK KKLPFSKQEK YIIFSIHATF GNSWSRIAKA 120 LPGRTDNAIK NFVNGHIKKC LKTGTIPIYP PQINIKYSTG SSEFSHIVSS DIQNLVVQEQ 180 VDLPSIQNTE EDAGDRLDSY LQTLQSSIEL VPQTQLVPPL QEFNTSFNSV VIQRLFHGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 38 | 143 | 7 | 110 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583519.1 | 1e-154 | transcription factor MYB101-like | ||||
Refseq | XP_020599915.1 | 1e-154 | transcription factor MYB101-like | ||||
TrEMBL | A0A2I0WL49 | 5e-80 | A0A2I0WL49_9ASPA; Transcription factor GAMYB |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.1 | 3e-38 | myb domain protein 33 |