PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18252 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | WRKY | ||||||||
Protein Properties | Length: 392aa MW: 42922.7 Da PI: 7.5211 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.2 | 3.5e-28 | 67 | 123 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vk+++ +rsYYrCt +C +kkkver+ +++v+e++Y+g+Hnhe PEQU_18252 67 DDGYNWRKYGQKQVKSTDRSRSYYRCTNGDCFAKKKVERCP-NGQVTEVIYRGQHNHE 123 8****************************************.***************8 PP | |||||||
2 | WRKY | 102.6 | 2.2e-32 | 237 | 294 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vkg+++prsYYrCt+ gC+v+k+ve+s++d k ++itYeg+Hnh+ PEQU_18252 237 SDGYRWRKYGQKIVKGNPNPRSYYRCTHDGCRVRKHVEKSSDDAKSIVITYEGKHNHD 294 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-25 | 56 | 125 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.69 | 61 | 125 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-23 | 62 | 125 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-28 | 66 | 124 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.8E-22 | 67 | 123 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.1E-32 | 225 | 296 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.785 | 231 | 296 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-27 | 231 | 296 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-36 | 236 | 295 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 238 | 294 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MSHQAVLATV TAQAQMQLQA GYPSPSGSLK NSSPQSMLLP LASETEKTSS FEQKSQSSLI 60 VPKTTTDDGY NWRKYGQKQV KSTDRSRSYY RCTNGDCFAK KKVERCPNGQ VTEVIYRGQH 120 NHEQPHRAKL SKLKGLPSSG AIGVTEGLDV PGVEPAEADP STSKVDQNSS NGNPEQQLFC 180 SSDCEGDGSI RAEEDPHEEQ EPEPKRRQVY ATDPTPVFRT VKQPKIVMQT AAAGHVSDGY 240 RWRKYGQKIV KGNPNPRSYY RCTHDGCRVR KHVEKSSDDA KSIVITYEGK HNHDVPTLQS 300 PIDPPVTTTL FIDSASSATP AETLDQSESM VDKKLSINSP PEIKKGSELG SEKGSESAQA 360 LLSMSCDPES GEEGMKSKLF TEKTATVPVR NS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-27 | 227 | 296 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-27 | 227 | 296 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020581217.1 | 0.0 | LOW QUALITY PROTEIN: probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 2e-75 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | A0A1S6YG45 | 0.0 | A0A1S6YG45_PHAEQ; WRKY DNA-binding protein | ||||
STRING | XP_008776488.1 | 1e-142 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5820 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13960.1 | 2e-66 | WRKY DNA-binding protein 4 |
Publications ? help Back to Top | |||
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