PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_18013 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 211aa MW: 23428.3 Da PI: 10.3978 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.6e-20 | 8 | 58 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 sg+ GVr+++ +grWvAeI+d s +r r +lg+++taeeAa+a+++a+++l+g PEQU_18013 8 SGFVGVRRRP-SGRWVAEIKDSS---QRIRLWLGTYDTAEEAARAYDEAARALRG 58 79********.7*********43...36*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 5.4E-15 | 8 | 58 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-20 | 8 | 66 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 7.04E-27 | 8 | 65 | No hit | No description |
SMART | SM00380 | 3.6E-31 | 9 | 72 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.402 | 9 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 10 | 21 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-27 | 10 | 66 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 32 | 48 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKKGDSRSGF VGVRRRPSGR WVAEIKDSSQ RIRLWLGTYD TAEEAARAYD EAARALRGDN 60 TRTNFTAAAA AAGGGVGGIG RPHCYQAAGD LSMTAKARLT RRIRSIVERS AAERRTNGWM 120 RVSDQHTMAS IFHPQKMLNE FWAKSVEFGG VGEEEKRWRW ELGFDLDMGE IDGRLEEEDR 180 KRFKVSSSII VPPSFSSLTA TATTAAPEKL S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-14 | 10 | 65 | 15 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020579097.1 | 1e-153 | dehydration-responsive element-binding protein 2B-like | ||||
TrEMBL | A0A2I0XCN9 | 1e-82 | A0A2I0XCN9_9ASPA; Ethylene-responsive transcription factor RAP2-11 | ||||
STRING | XP_008809070.1 | 1e-38 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12429 | 26 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-16 | related to AP2 11 |