PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_17862

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

MYB_related

Protein Properties

Length: 529aa MW: 58295.3 Da PI: 7.9194

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_17862	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.2	5.8e-16	17	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++G W +I +++g ++t+ q++s+ qk+ PEQU_17862 17 REKWTDEEHDRFLEALRLYGRA-WQRIQEHIG-TKTAVQIRSHAQKF 61 789***************88.*****.**********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.72E-17	11	67	IPR009057	Homeodomain-like
PROSITE profile	PS51294	19.753	12	66	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.0E-16	15	64	IPR006447	Myb domain, plants
SMART	SM00717	2.1E-12	16	64	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-13	17	60	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.4E-8	17	57	IPR009057	Homeodomain-like
CDD	cd00167	1.42E-9	19	62	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MTWDLQTRKP YTITKQREKW TDEEHDRFLE ALRLYGRAWQ RIQEHIGTKT AVQIRSHAQK 60 FFLKLEKGTG GMTRGHPHVI EIPPPRPKRK PYSSYPEMIG ATSQNPSAEV EGKSLSKAFV 120 LIGTDKVAMD TKKQMPTLEE LKETKKITKS PRKNDADLQN LGMSEYFTDS RFGFNTVDKW 180 QLLKQMEKPF TSSTDNLQGD QNQERIPVQL EGTKYSSEGI TKSLSAQPEP NADLNLSLDS 240 TRRATHTTKN LMSSVPQAVP SISPNNQLNI DDNSFTALIN LTNYFPSLLA SALSQNPAIH 300 QAASVAAASL PPTFVDFSIH SNTKLVSEAL EKESSISCIS AIVAATVAAA SAWWRVHGLL 360 PSQFQPNHAF TQAMARAIES AQVHEDNTNS KENIGQTNKQ KAPQIDFPEQ NETNRITQPC 420 SALLEPSSSP DSCESSKMNR PPKSTKCALS SISGVHDENH APGKKKHDPS SCDSNTTPSS 480 EVEKDAGLNN KEAKGVNEQG EQGPSIVQGF RDTLGNSKSC SEGLKQVII

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MTWDLQTRKP YTITKQREKW TDEEHDRFLE ALRLYGRAWQ RIQEHIGTKT AVQIRSHAQK  60
FFLKLEKGTG GMTRGHPHVI EIPPPRPKRK PYSSYPEMIG ATSQNPSAEV EGKSLSKAFV  120
LIGTDKVAMD TKKQMPTLEE LKETKKITKS PRKNDADLQN LGMSEYFTDS RFGFNTVDKW  180
QLLKQMEKPF TSSTDNLQGD QNQERIPVQL EGTKYSSEGI TKSLSAQPEP NADLNLSLDS  240
TRRATHTTKN LMSSVPQAVP SISPNNQLNI DDNSFTALIN LTNYFPSLLA SALSQNPAIH  300
QAASVAAASL PPTFVDFSIH SNTKLVSEAL EKESSISCIS AIVAATVAAA SAWWRVHGLL  360
PSQFQPNHAF TQAMARAIES AQVHEDNTNS KENIGQTNKQ KAPQIDFPEQ NETNRITQPC  420
SALLEPSSSP DSCESSKMNR PPKSTKCALS SISGVHDENH APGKKKHDPS SCDSNTTPSS  480
EVEKDAGLNN KEAKGVNEQG EQGPSIVQGF RDTLGNSKSC SEGLKQVII

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020577873.1	0.0	protein LHY-like isoform X3
TrEMBL	A0A2I0WPE8	0.0	A0A2I0WPE8_9ASPA; Protein LHY

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2722	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01060.4	7e-32	MYB_related family protein