PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PEQU_17594

Organism

Phalaenopsis equestris

Taxonomic ID

78828

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis

Family

LBD

Protein Properties

Length: 169aa MW: 19298.9 Da PI: 7.2745

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PEQU_17594	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	119.8	1.5e-37	9	109	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+C++dC+lapyf ++p +fa+vhk+FGasn+ ++lk+lp ++r +a++++ +eA +r++dPvyG+ ++i +lq++++++++el+++k+ PEQU_17594 9 RCAACKYLRRRCSEDCILAPYFHPSNPYRFACVHKIFGASNIARMLKHLPAHKRAEAADAMSWEAYWRVQDPVYGSNAIIAHLQHEIRKAQNELQMIKA 107 6**********************************************************************************************9998 PP DUF260 100 el 101 +l PEQU_17594 108 QL 109 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.66	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-37	9	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
MSSINGGRRC AACKYLRRRC SEDCILAPYF HPSNPYRFAC VHKIFGASNI ARMLKHLPAH 60 KRAEAADAMS WEAYWRVQDP VYGSNAIIAH LQHEIRKAQN ELQMIKAQLA IHQVILQQHS 120 QAQPNQQMQA HQEEAYLAFE DEAFVLPDLP HTASDQCEII NSRCTDDVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-32	2	109	4	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-32	2	109	4	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020580321.1	1e-125	LOB domain-containing protein 24-like
Swissprot	P59468	3e-41	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	A0A2I0AM25	7e-57	A0A2I0AM25_9ASPA; LOB domain-containing protein 24
STRING	XP_008801576.1	4e-48	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5282	35	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	6e-43	LOB domain-containing protein 24