PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17359
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family BBR-BPC
Protein Properties Length: 299aa    MW: 32522.3 Da    PI: 10.2093
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17359genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind301.82.5e-9212991301
   GAGA_bind   1 mdddgsre.rnkg.yyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverd.nkllalll 86 
                 mdddg+   +n+g +y+  + lk nlglqlm s+ erd+k+  + +   ++ + + +r+          m f  r+ + ++      +rd +kll++ +
  PEQU_17359   1 MDDDGTLGiQNWGgFYRA-PPLKGNLGLQLMPSVGERDTKPFFSGM---GSGGGYLQREcevtgpsampMGF-ARNIWYHN------NRDsSKLLHVFH 88 
                 9*****999****66665.59********************65555...55666666666666666666999.89999999......444144555555 PP

   GAGA_bind  87 venslasalpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesa 183
                  +++    + ++   l++t  +    + ++  + l++  v+++ee++   ++  +a++++    +k+++ ++++ k++k kk+kk   ++k++++++  
  PEQU_17359  89 GSHQEP--SHSYGALLPETAAATVPGTaVHTlQMLQQVEVPMKEERIPAIEE-PSAPQQEAACLNKRSKGQGRSSKVSKPKKAKKAA-TPKQESSNPF- 182
                 444322..22344556666666655552333333555555555554333322.2333333333333334566777788888887744.3433443343. PP

   GAGA_bind 184 derskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnp 282
                   r ++ kk++d+v+ng++lD s++P+PvC+CtG ++qCY+WG+GGWqSaCCtt iS+yPLP+stkrrgaRiagrKmSqgafkk+LekLa+eG d+s p
  PEQU_17359 183 -GRGRSAKKTMDMVINGIDLDLSGMPAPVCTCTGRPQQCYRWGAGGWQSACCTTIISIYPLPMSTKRRGARIAGRKMSQGAFKKVLEKLAGEGQDFSSP 280
                 .589*********************************************************************************************** PP

   GAGA_bind 283 vDLkdhWAkHGtnkfvtir 301
                 +DLk +WAkHGtnkfvtir
  PEQU_17359 281 IDLKPFWAKHGTNKFVTIR 299
                 ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.6E-981299IPR010409GAGA-binding transcriptional activator
SMARTSM012267.3E-1331299IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MDDDGTLGIQ NWGGFYRAPP LKGNLGLQLM PSVGERDTKP FFSGMGSGGG YLQRECEVTG  60
PSAMPMGFAR NIWYHNNRDS SKLLHVFHGS HQEPSHSYGA LLPETAAATV PGTAVHTLQM  120
LQQVEVPMKE ERIPAIEEPS APQQEAACLN KRSKGQGRSS KVSKPKKAKK AATPKQESSN  180
PFGRGRSAKK TMDMVINGID LDLSGMPAPV CTCTGRPQQC YRWGAGGWQS ACCTTIISIY  240
PLPMSTKRRG ARIAGRKMSQ GAFKKVLEKL AGEGQDFSSP IDLKPFWAKH GTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020573265.10.0barley B recombinant-like protein A
SwissprotP0DH883e-86BBRA_ORYSJ; Barley B recombinant-like protein A
SwissprotP0DH893e-86BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBLA0A2I0WCW40.0A0A2I0WCW4_9ASPA; Barley B recombinant-like protein B
STRINGXP_008787890.11e-108(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-78basic pentacysteine 2
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]