PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17178 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 207aa MW: 24004 Da PI: 10.0351 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.2 | 1.6e-17 | 46 | 91 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+q+G+ +W++Ia+++ gR++k+c++rw++ PEQU_17178 46 RGHWRPAEDARLKELVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 91 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.7e-17 | 98 | 141 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r+++T+eE+e+l+ a+k +G++ W++I r ++ gRt++ +k+ w+ PEQU_17178 98 RKAFTEEEEERLLSAHKFYGNK-WALICRLFP-GRTDNAVKNQWHV 141 789*******************.*********.***********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.138 | 41 | 96 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-13 | 45 | 94 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.27E-28 | 45 | 139 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.2E-16 | 46 | 91 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-27 | 47 | 99 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.74E-11 | 49 | 90 | No hit | No description |
PROSITE profile | PS51294 | 17.873 | 97 | 147 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-14 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-14 | 98 | 140 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-19 | 100 | 145 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.22E-9 | 100 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MGARSNEAFS PSEEKEKRQS WGLEALLGEE IESREHGGVN SKLCVRGHWR PAEDARLKEL 60 VAQYGPQNWN LIAEKLDGRS GKSCRLRWFN QLDPRINRKA FTEEEEERLL SAHKFYGNKW 120 ALICRLFPGR TDNAVKNQWH VIMARRQREN SDAHKRRKSS SSSFVSSVKM EEKNVYRDEF 180 SSSKSFHLSL FLNSYRFAGP SLLIGEL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 6e-33 | 43 | 146 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 6e-33 | 43 | 146 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597681.1 | 1e-150 | transcription factor MYB56-like | ||||
Swissprot | Q5NBM8 | 1e-72 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A2I0VU41 | 2e-89 | A0A2I0VU41_9ASPA; Transcription factor MYB44 | ||||
STRING | cassava4.1_024606m | 1e-72 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-68 | myb domain protein 105 |