PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_17173
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 351aa    MW: 39790.3 Da    PI: 8.6921
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_17173genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.32.5e-5281571128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................kvkaeekewyfFskrdkkyatgkrknra 77 
                 lppGfrFhPtdee++v+yL++k+ ++ + + +++  vd++k+ePw+Lp                       k+k +ekewyf+++rd+ky+tg+r+nra
  PEQU_17173   8 LPPGFRFHPTDEEIIVHYLTPKILNHGFVA-RAMGVVDLNKCEPWELPGtrpcfisfgaknlnlliflhagKAKMGEKEWYFYCQRDRKYPTGTRTNRA 105
                 79*************************999.88***************5589***************9999778899********************** PP

         NAM  78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 t+sgyWkatgkdke++++ ++ l+g+kktLvfy+grapkgekt+Wv+heyrl
  PEQU_17173 106 TESGYWKATGKDKEIYRRkTEVLIGMKKTLVFYTGRAPKGEKTNWVIHEYRL 157
                 *****************855566***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-566184IPR003441NAC domain
PROSITE profilePS5100555.938183IPR003441NAC domain
PfamPF023654.0E-289157IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEDANFHLPP GFRFHPTDEE IIVHYLTPKI LNHGFVARAM GVVDLNKCEP WELPGTRPCF  60
ISFGAKNLNL LIFLHAGKAK MGEKEWYFYC QRDRKYPTGT RTNRATESGY WKATGKDKEI  120
YRRKTEVLIG MKKTLVFYTG RAPKGEKTNW VIHEYRLQTN FSSLSSQFKS SKDEWVVCRV  180
FHKNANGGKS SPITIDSNSL HRIKGFKEEF LSSTNTLPPL MDPPYFISGH DQTYEFKPVE  240
PPAIPSYFSF LNDVDDYMIM SNPSPRTQNS CWTMPGAAMQ SSSSSLPPIR RHCKAQQFSN  300
QSMLSQETGI STDRSTDVTS VVVKHNIGIE DFDGSSMAAG GVMDLCGMWK C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-47518917174NAC domain-containing protein 19
3swm_B4e-47518917174NAC domain-containing protein 19
3swm_C4e-47518917174NAC domain-containing protein 19
3swm_D4e-47518917174NAC domain-containing protein 19
3swp_A4e-47518917174NAC domain-containing protein 19
3swp_B4e-47518917174NAC domain-containing protein 19
3swp_C4e-47518917174NAC domain-containing protein 19
3swp_D4e-47518917174NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020597718.10.0NAC domain-containing protein 100-like
TrEMBLA0A2I0VU260.0A0A2I0VU26_9ASPA; NAC domain-containing protein 100
STRINGXP_008782760.11e-104(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-81Arabidopsis NAC domain containing protein 87