PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NAC | ||||||||
Protein Properties | Length: 351aa MW: 39790.3 Da PI: 8.6921 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.3 | 2.5e-52 | 8 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk......................kvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhPtdee++v+yL++k+ ++ + + +++ vd++k+ePw+Lp k+k +ekewyf+++rd+ky+tg+r+nra PEQU_17173 8 LPPGFRFHPTDEEIIVHYLTPKILNHGFVA-RAMGVVDLNKCEPWELPGtrpcfisfgaknlnlliflhagKAKMGEKEWYFYCQRDRKYPTGTRTNRA 105 79*************************999.88***************5589***************9999778899********************** PP NAM 78 tksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 t+sgyWkatgkdke++++ ++ l+g+kktLvfy+grapkgekt+Wv+heyrl PEQU_17173 106 TESGYWKATGKDKEIYRRkTEVLIGMKKTLVFYTGRAPKGEKTNWVIHEYRL 157 *****************855566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.26E-56 | 6 | 184 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.93 | 8 | 183 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.0E-28 | 9 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEDANFHLPP GFRFHPTDEE IIVHYLTPKI LNHGFVARAM GVVDLNKCEP WELPGTRPCF 60 ISFGAKNLNL LIFLHAGKAK MGEKEWYFYC QRDRKYPTGT RTNRATESGY WKATGKDKEI 120 YRRKTEVLIG MKKTLVFYTG RAPKGEKTNW VIHEYRLQTN FSSLSSQFKS SKDEWVVCRV 180 FHKNANGGKS SPITIDSNSL HRIKGFKEEF LSSTNTLPPL MDPPYFISGH DQTYEFKPVE 240 PPAIPSYFSF LNDVDDYMIM SNPSPRTQNS CWTMPGAAMQ SSSSSLPPIR RHCKAQQFSN 300 QSMLSQETGI STDRSTDVTS VVVKHNIGIE DFDGSSMAAG GVMDLCGMWK C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 5 | 189 | 17 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020597718.1 | 0.0 | NAC domain-containing protein 100-like | ||||
TrEMBL | A0A2I0VU26 | 0.0 | A0A2I0VU26_9ASPA; NAC domain-containing protein 100 | ||||
STRING | XP_008782760.1 | 1e-104 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 2e-81 | Arabidopsis NAC domain containing protein 87 |