PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_17021 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26923.6 Da PI: 9.7246 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.5 | 2.4e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l+ ++++G ++W++I+++ g+ R++k+c++rw +yl PEQU_17021 14 RGPWTCEEDRILISHIEKYGHENWRAIPKKAGLFRCGKSCRLRWANYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 46.1 | 1.1e-14 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++++eE++ ++ ++ +lG++ W++Ia++++ gRt++++k+ w+ + PEQU_17021 67 RGNFSKEEEDTIISLHSLLGTR-WSAIAAKLP-GRTDNEIKNLWHGH 111 89********************.*********.*********99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.428 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.7E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.38E-10 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.864 | 66 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.94E-8 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MVRAPCCDNM GVRRGPWTCE EDRILISHIE KYGHENWRAI PKKAGLFRCG KSCRLRWANY 60 LRPGIKRGNF SKEEEDTIIS LHSLLGTRWS AIAAKLPGRT DNEIKNLWHG HLKKRFDPKK 120 NVKQLSKQKN RRDYKANMEF KEAKHGEHVN SPASFTNADQ DFTSTVINTV GGGNKSETMY 180 KNYQHFRFDE SLWFEPQQFM MDFSVNEISI TEALNPMSFY NGESLNLWLN M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-26 | 14 | 117 | 7 | 109 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020589781.1 | 1e-176 | myb-related protein Myb4-like | ||||
Swissprot | Q6K1S6 | 4e-68 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
STRING | XP_008785342.1 | 4e-70 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 6e-68 | myb domain protein 14 |
Publications ? help Back to Top | |||
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