PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_16438 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20148.1 Da PI: 10.6966 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.6 | 2.5e-31 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+++nrqvtf+kRrng+lKKA+ELS+LCdaeva+iifss+g+lyeyss PEQU_16438 11 KRIESTTNRQVTFCKRRNGLLKKAYELSILCDAEVALIIFSSRGRLYEYSS 61 79***********************************************96 PP | |||||||
2 | K-box | 93 | 5.2e-31 | 81 | 165 | 8 | 91 |
K-box 8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 s +e + ++++qqe+akL+ +++ Lq+ +Rhl+Ge+L sLs+keL+qLe++Le+++++iRskK+e+l+++ie +qk+ +++ +++ PEQU_16438 81 SvVEINSQQYYQQEAAKLRHQMQILQNANRHLIGEGLASLSIKELKQLESRLERAITRIRSKKQEMLFSEIEFMQKRVRATISHH 165 25778899*********************************************************************99876666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-41 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.375 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-33 | 4 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.07E-42 | 4 | 78 | No hit | No description |
PRINTS | PR00404 | 2.0E-32 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-26 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-32 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.0E-32 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.9E-22 | 84 | 161 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.174 | 88 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
REMGRGKIQI KRIESTTNRQ VTFCKRRNGL LKKAYELSIL CDAEVALIIF SSRGRLYEYS 60 SHSTKSTIER YKSTSANGPN SVVEINSQQY YQQEAAKLRH QMQILQNANR HLIGEGLASL 120 SIKELKQLES RLERAITRIR SKKQEMLFSE IEFMQKRVRA TISHHSMKNH NSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-22 | 3 | 79 | 1 | 75 | MEF2C |
5f28_B | 1e-22 | 3 | 79 | 1 | 75 | MEF2C |
5f28_C | 1e-22 | 3 | 79 | 1 | 75 | MEF2C |
5f28_D | 1e-22 | 3 | 79 | 1 | 75 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development. {ECO:0000269|PubMed:29853599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020575771.1 | 1e-109 | MADS-box transcription factor 21-like | ||||
Refseq | XP_020575772.1 | 1e-109 | MADS-box transcription factor 21-like | ||||
Refseq | XP_020575773.1 | 1e-109 | MADS-box transcription factor 21-like | ||||
Swissprot | A0A217EJJ0 | 6e-81 | AG11S_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | A0A2Z5CU36 | 4e-91 | A0A2Z5CU36_9ASPA; AGAMOUS-like transcription factor | ||||
TrEMBL | K4JEZ8 | 3e-91 | K4JEZ8_9ASPA; D-class MADS-box-like protein | ||||
STRING | XP_008781978.1 | 8e-87 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP649 | 37 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 7e-79 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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