PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_15996 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | CO-like | ||||||||
Protein Properties | Length: 429aa MW: 47215.7 Da PI: 7.2092 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19 | 3e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C++++ lC +C + H+ H++ PEQU_15996 4 YCDFCGDQRSMVYCRSDSASLCLSCDRNVHSAnalsrrHSR 44 7*****************************65677777766 PP | |||||||
2 | zf-B_box | 19.4 | 2.2e-06 | 46 | 88 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+++ ++++ C + + lC++C ++H++ H+ + PEQU_15996 46 LLCDRCYLQPATVRCIEESISLCHNCDWNGHSSftsasgHKKQ 88 57*****************************778888888866 PP | |||||||
3 | CCT | 62.1 | 1.8e-21 | 375 | 418 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RYkeK+k RkFeKkirY+sRKa+A+ R RvKGrFvk+ PEQU_15996 375 RGNAVMRYKEKKKARKFEKKIRYASRKARADIRRRVKGRFVKAG 418 7789*************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.968 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.2E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.44E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 8.546 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 0.00892 | 47 | 77 | No hit | No description |
Pfam | PF06203 | 4.9E-16 | 375 | 417 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 15.229 | 375 | 417 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MGSYCDFCGD QRSMVYCRSD SASLCLSCDR NVHSANALSR RHSRTLLCDR CYLQPATVRC 60 IEESISLCHN CDWNGHSSFT SASGHKKQTI TCYSGCPSAA ELANLWSFVS EFPPMADSSC 120 EQGMGLMSIN ENSASTYWGP LPNSCNADID NISKINNLEN QNKQNFHIGS ATSSPTPMIC 180 SADQEAGSVD STPPEKKTSY RIMRGIHASL KAMRENHKKP SNAGMKDTEN DKDGFYNGFS 240 GNVDLSFENY EEYFGTSHTH AEKLFDDVGI DSFFEMESSA ANSNCQGEFA AEAKSLHTTC 300 SNAVSADSVM STPVAKANSS VLVPARQAHS IPAYPFLFLS SVGDYQECGV SPMLLVGETQ 360 WYAPGPESSI KAANRGNAVM RYKEKKKARK FEKKIRYASR KARADIRRRV KGRFVKAGEA 420 YDYDPLCQT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020583947.1 | 0.0 | LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A385IU53 | 0.0 | A0A385IU53_9ASPA; CONSTANS-like protein-like protein | ||||
STRING | XP_008803173.1 | 1e-175 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 1e-100 | CONSTANS-like 9 |