PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15890
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family HD-ZIP
Protein Properties Length: 705aa    MW: 79005.2 Da    PI: 6.774
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15890genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.47.9e-211671156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t+ q++eLe+ F+++++p++++r +L++ lgL+ rq+k+WFqNrR+++k
  PEQU_15890 16 KKRYHRHTPRQIQELESIFKMCPHPDEKQRMQLSRDLGLEPRQIKFWFQNRRTQMK 71
                688999***********************************************998 PP
2START146.52.5e-462214412204
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 la + ++el+++a  +ep+W++      e++n +++   f++ +        ++e++r sg v+m++  lv  ++d++ +W e ++     a t++v++
  PEQU_15890 221 LATRSMDELIRLARTNEPLWTRIDsdgrENLNLETYDALFPRPGQqfrsadTRVETSRGSGDVIMNSFALVDMFMDSS-KWMELFPtivsNARTIDVLM 318
                 78899****************9999999888888888877765557899999**************************.9*999999999********* PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXX. CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlp. 177
                 sg      gal+lm+ e+  lsp+vp R+f f+Ry++ql++g w+i dvS+ s++     +s  R  +lpSg+li++++ng+sk++wveh++ +++ p 
  PEQU_15890 319 SGmdgsrsGALVLMFGEFLGLSPVVPsREFCFLRYCQQLEQGLWAISDVSIPSPKVHFL-PSPKR--RLPSGCLIQDMPNGYSKIVWVEHMEIEEKNPt 414
                 ***************************************************99999884.55555..7******************************* PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqc 204
                 h+l++ lv sg+a+ga++wvatlqr c
  PEQU_15890 415 HQLYHDLVDSGIAFGAQRWVATLQRMC 441
                 *************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.6E-22367IPR009057Homeodomain-like
SuperFamilySSF466891.88E-20673IPR009057Homeodomain-like
PROSITE profilePS5007117.4431373IPR001356Homeobox domain
SMARTSM003893.2E-191477IPR001356Homeobox domain
CDDcd000869.16E-191671No hitNo description
PfamPF000462.4E-181671IPR001356Homeobox domain
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084843.52211446IPR002913START domain
SuperFamilySSF559611.33E-30213443No hitNo description
CDDcd088759.67E-104215441No hitNo description
SMARTSM002341.6E-37220443IPR002913START domain
PfamPF018522.4E-39221441IPR002913START domain
Gene3DG3DSA:3.30.530.203.9E-5339437IPR023393START-like domain
SuperFamilySSF559611.37E-21460697No hitNo description
Gene3DG3DSA:3.30.530.202.5E-4502666IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MDSGDEQDVS VPKGKKKRYH RHTPRQIQEL ESIFKMCPHP DEKQRMQLSR DLGLEPRQIK  60
FWFQNRRTQM KARNFSSPWL FQVQHERSDN CVLRSENDRI RCENIAMSEA LKNIICPTCG  120
TSQSSEDSYF DEQKLRMENA RLKDELDRVS SITSKYLGRP AMQLLPIQTL SASSVDIAVG  180
GYENTEFPPS LDLDLLGIGL QSMSFPFPTV SDVERPMMLE LATRSMDELI RLARTNEPLW  240
TRIDSDGREN LNLETYDALF PRPGQQFRSA DTRVETSRGS GDVIMNSFAL VDMFMDSSKW  300
MELFPTIVSN ARTIDVLMSG MDGSRSGALV LMFGEFLGLS PVVPSREFCF LRYCQQLEQG  360
LWAISDVSIP SPKVHFLPSP KRRLPSGCLI QDMPNGYSKI VWVEHMEIEE KNPTHQLYHD  420
LVDSGIAFGA QRWVATLQRM CRWISCLNSP RDLGGVIPND DGKRSMMRLS QRMVSNFCST  480
LGSYNGYRWT APAGLNDVGV RVTVHRCSDP GQPNGVFLCA ATSLWLPYSP HSVFSFLRDE  540
QSRVQWDVLS RGKAVQEVTR IPNGQHPGNC ISLLRATMNP PNMNDRSMLI LQESCTDPSG  600
SLVVYASIEV PSINIAINGE DPSFIPLLPS GFVVFPDGRS GAGINATSSL NPLRVPSGSV  660
LTVAFQIMVS SLPSAKLSHE SVMTVNNVIS TTVQQIKSAL RSLDP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020582158.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2I0VTB80.0A0A2I0VTB8_9ASPA; Homeobox-leucine zipper protein ROC8
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11