PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15293
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family NAC
Protein Properties Length: 274aa    MW: 31850.1 Da    PI: 7.449
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15293genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.6e-5371341129
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdee++++yL +k+++++++   ++ e+  +++ePwdLp k+k +ekewyfF+++dkky+tg r+nrat++gyWkatgkdk++++ kg l
  PEQU_15293   7 LPPGFRFHPTDEEIITHYLFEKITDQNFKS-IALGEASFNDCEPWDLPGKAKMGEKEWYFFCQKDKKYPTGMRTNRATATGYWKATGKDKKIFKGKGVL 104
                 79*************************999.78***************99999********************************************** PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129
                 vg+kktLvfy+gr+ kg kt+Wvmheyrle
  PEQU_15293 105 VGMKKTLVFYRGRSLKGLKTNWVMHEYRLE 134
                 ****************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-613158IPR003441NAC domain
PROSITE profilePS5100556.6867158IPR003441NAC domain
PfamPF023652.1E-298133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MVQSLCLPPG FRFHPTDEEI ITHYLFEKIT DQNFKSIALG EASFNDCEPW DLPGKAKMGE  60
KEWYFFCQKD KKYPTGMRTN RATATGYWKA TGKDKKIFKG KGVLVGMKKT LVFYRGRSLK  120
GLKTNWVMHE YRLEGTLHQY YNLPSRKDEW VVCKVYYKKG SEIRATAQSE ERMNPSSFVD  180
DDLSVELNYL PQLTDSLYIN ISSSKFMKET NETGNEMNRA MQFELMPPDQ PAVTSHFPQD  240
TGMCYIGSFQ ARDQDPFAYV QSADFDGFWN RDLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-50216112168NO APICAL MERISTEM PROTEIN
1ut4_B9e-50216112168NO APICAL MERISTEM PROTEIN
1ut7_A9e-50216112168NO APICAL MERISTEM PROTEIN
1ut7_B9e-50216112168NO APICAL MERISTEM PROTEIN
3swm_A1e-49216115171NAC domain-containing protein 19
3swm_B1e-49216115171NAC domain-containing protein 19
3swm_C1e-49216115171NAC domain-containing protein 19
3swm_D1e-49216115171NAC domain-containing protein 19
3swp_A1e-49216115171NAC domain-containing protein 19
3swp_B1e-49216115171NAC domain-containing protein 19
3swp_C1e-49216115171NAC domain-containing protein 19
3swp_D1e-49216115171NAC domain-containing protein 19
4dul_A9e-50216112168NAC domain-containing protein 19
4dul_B9e-50216112168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020583464.10.0NAC domain-containing protein 92-like
SwissprotQ9FK442e-84NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2I0WNX71e-148A0A2I0WNX7_9ASPA; NAC domain-containing protein 100
STRINGLus100268799e-88(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145237121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.22e-87Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]