PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15235
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 398aa    MW: 44039.1 Da    PI: 5.9498
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15235genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2223.1e-68433872373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL +cA+a++s+d++laq+lL+ l+++a pdgd++qRl+  f++AL  r +r          +s+ts          l +f +++P ++f++ + N+
  PEQU_15235  43 EQLLAHCAHAIDSHDATLAQQLLWVLHNIAPPDGDSNQRLTYAFLRALLLRASR----------SSPTS----------LAAFIDLTPSHRFGFSASNS 121
                 799************************************************999..........33332..........3469**************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl.......vakrledlel 191
                 aI +a+ +   +Hi+ ++ ++ +Q p+L+++L+ +Rp++ p lR+T++ s                  fA++ ++ +efn++        ++ +e l+l
  PEQU_15235 122 AIADATLSFPILHIVHLSTTHAMQLPTLIETLSsCRPDSLPFLRVTVLPS------------------FARSRNIAMEFNIVqstpadgFSSLIEHLRL 202
                 ********************************989************999..................*************988877777778888999 PP

        GRAS 192 eeLrvkp.gEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                 ++L  +p  Eal++n++ +lh + des + +    +r+ +L++++ l P++++vve++ad ++++ +er+  a++y++  fd++e+ lp+  e+r+++E
  PEQU_15235 203 QQLVAEPgSEALVINSHSMLHFTSDESSAPNIsaaPRTMFLSALRALDPTILIVVEEDADFTAGNVVERLRAAFNYMWIPFDAVESFLPKGGEQRRTYE 301
                 999999999************999888765556789*************************************************************** PP

        GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv.lgWkdrpLvsvSaW 373
                 ++ + ++i+n++a+eg er+er et++kW +r++ +GF++v ++e+a+ + ++++ +++  g+ v++++++++ l+Wk++ ++++SaW
  PEQU_15235 302 EA-VCWKIENAIAQEGLERVERLETKSKWVQRMRGVGFRAVGFGEEAVGELRSMVDEHS-AGWGVKKDEEEMLvLTWKGHDVLFASAW 387
                 **.99*****************************************************9.88888877665555************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098527.46416368IPR005202Transcription factor GRAS
PfamPF035141.1E-6543387IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MQFKETTNIP WPDHYLFPSS SASSSKSHHQ LNNLSISSTA CMEQLLAHCA HAIDSHDATL  60
AQQLLWVLHN IAPPDGDSNQ RLTYAFLRAL LLRASRSSPT SLAAFIDLTP SHRFGFSASN  120
SAIADATLSF PILHIVHLST THAMQLPTLI ETLSSCRPDS LPFLRVTVLP SFARSRNIAM  180
EFNIVQSTPA DGFSSLIEHL RLQQLVAEPG SEALVINSHS MLHFTSDESS APNISAAPRT  240
MFLSALRALD PTILIVVEED ADFTAGNVVE RLRAAFNYMW IPFDAVESFL PKGGEQRRTY  300
EEAVCWKIEN AIAQEGLERV ERLETKSKWV QRMRGVGFRA VGFGEEAVGE LRSMVDEHSA  360
GWGVKKDEEE MLVLTWKGHD VLFASAWMPA APPPPLIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B3e-384338988474Protein SHORT-ROOT
5b3h_B2e-384338934420Protein SHORT-ROOT
5b3h_E2e-384338934420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020687676.10.0scarecrow-like protein 32
SwissprotQ9SN221e-123SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2I0WPV20.0A0A2I0WPV2_9ASPA; Scarecrow-like protein 32
STRINGSi029796m1e-153(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-109GRAS family protein