PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PEQU_15233 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 23214.4 Da PI: 8.5044 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 98.1 | 9.2e-31 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++Cvl+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Gavg++ ++++ l+q++++ PEQU_15233 2 SCNGCRVLRKGCSESCVLRPCIqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPETQRPALFQSLLYEACGRTINPVNGAVGLLATGNWSLCQAAVDK 100 6**********************************************************************************************9887 PP DUF260 95 al 96 +l PEQU_15233 101 VL 102 65 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.221 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-25 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MSCNGCRVLR KGCSESCVLR PCIQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPETQR 60 PALFQSLLYE ACGRTINPVN GAVGLLATGN WSLCQAAVDK VLRGGTLSPQ PELAGAKTGN 120 FLTEAEGDGE ICARPRNNWP PSFSAAKRRK FPIAADRTQP PADLHLCLTQ RSSAPTGMDD 180 KRRPGSPSMN SEESVTTTED NFHDRRPRLL NLLV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020584238.1 | 1e-158 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 8e-71 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A2I0WPW0 | 1e-126 | A0A2I0WPW0_9ASPA; LOB domain-containing protein 38 | ||||
STRING | XP_008787166.1 | 3e-88 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4084 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G49940.1 | 4e-73 | LOB domain-containing protein 38 |