PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_15147
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family SBP
Protein Properties Length: 1009aa    MW: 111143 Da    PI: 7.5161
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_15147genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.3e-4173150178
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                 +Cqv++C+adls+ak+yhrrhkvCe+hsk++++lv++++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+
  PEQU_15147  73 MCQVDDCKADLSNAKDYHRRHKVCEFHSKTAKALVAKQMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQP 150
                 6**************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.8E-3468135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.88171148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.44E-3772152IPR004333Transcription factor, SBP-box
PfamPF031101.3E-2974147IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.02E-7792900IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.9E-7793909IPR020683Ankyrin repeat-containing domain
CDDcd002044.81E-6797888No hitNo description
PROSITE profilePS500889.324835856IPR002110Ankyrin repeat
PROSITE profilePS502979.224835856IPR020683Ankyrin repeat-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MWKWDSVRFS SKPSEDVPEV LCLGTQGVAG AAESGENLAL KLGGGGCRVE EQVGRANKRV  60
RSGSPGSAAS YPMCQVDDCK ADLSNAKDYH RRHKVCEFHS KTAKALVAKQ MQRFCQQCSR  120
FHPLTEFDEG KRSCRRRLAG HNRRRRKTQP EDASTNILAS ESQDAKVSGS VDIANLFAIL  180
ARVLSGNIAG KPTSMPSVPE RDQLIQIINK IGSLPPTIPS PKTLVQRSFD LNVSQAPQQS  240
SSEQPSQGRG NLSIPSTMNL LGVLSAALAS SNPNVLASMS QESSHENGSS KSREACQKAI  300
NSINSQNKAA SVFPPSRDRE TDFNGHSQLN SSEHSILIGM PSLPLQLFGS AGSAEDDSPP  360
KLGSAVKYPS SESSNPIEDR SPSCSPPIAK RLFPLRSESD KKEESMSICR EDHAVAEAST  420
TCGWAPPLEL FKDPDRQLDN QTVQNMPYSG GYSSSSGSDQ SPSSSNCAVQ ERTGRIIFKL  480
FDKDPSNLPG TLRSEILNWL SRSPTEIESY IRPGCVVLSI YLCMASAAWH ELEEDFLQRV  540
TSLVNCSGSE FWRNLRFWVR TSTQIVSHRD GKIRVCKSWR SLTAPEITSI SPIAVLSGQE  600
TSVILKGPNL SIPGTKIHCT YKGGYWSKEV FGSTHAGAIY DDSGTESFIL PKDSPFLYGR  660
YFIEVDNGFR GNSFPVIIAD ATICEELRSL EVEFDEDLDA ISEDLYQESR RAQSREDTLH  720
FLNELGWLFQ RKNHSDFPFI DFAASRFKYL LTFSVERDMS ALVKKLLDVL MERCHGGDSV  780
LNESLELLLE LQLLSRAVKK KCRNMVELLL NYSVKNEITK DSRTYLFPPN YTGPGGLTPL  840
HLAASMGNAE DMVDALTNDP QGIGLNCWVS KMDESGRSPS FYASSTNNSY NMLVARKLVD  900
KKNGQVSIKI RQEDKSMENI CAELKPAAKH VNACSLEAMA ISSCAQCALA AEARLVRINH  960
HRGFLQRPYV HSILAIAAVC VCVCLFFRGA PFVGSIAPFK WENLDFGPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3063147184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00155DAPTransfer from AT1G20980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020575955.10.0squamosa promoter-binding-like protein 15
SwissprotA2YX040.0SPL15_ORYSI; Squamosa promoter-binding-like protein 15
SwissprotQ6Z8M80.0SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBLA0A2H4H2B00.0A0A2H4H2B0_9ASPA; Squamosa promoter-binding-like protein 5 (Fragment)
STRINGXP_008799143.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54563853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20980.10.0squamosa promoter binding protein-like 14