PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14820 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 38896.3 Da PI: 4.6918 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.4 | 5.7e-21 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f+t+eeAa+a++aa++k +g PEQU_14820 116 QYRGIRQRP-WGKWAAEIRDPRK---GERVWLGTFDTPEEAARAYDAAARKVRG 165 69*******.**********954...3************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.816 | 116 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.36E-23 | 116 | 174 | No hit | No description |
SMART | SM00380 | 5.6E-37 | 116 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-33 | 116 | 175 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-23 | 116 | 175 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.4E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.9E-14 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MCGGAIISDF IPSARQRRVA KDCLWADQGK KKKKKRNDGR KIRAEEFDDD FEADFQEFKD 60 EVTEVDEMEE PFDVKSFAFR PKLAPLSRAE DSTILKRFQL DGDADHKSGK RKRKNQYRGI 120 RQRPWGKWAA EIRDPRKGER VWLGTFDTPE EAARAYDAAA RKVRGKKAKV NFPDEAPKTA 180 LSHPPQTLQE NSNWESSFDA NYNFYSSFCM GEEIVVPIKI QNMYSEQESN SLNCSDYGWE 240 HEFNNPEINS IPSTTVDELK SAYLEESAAG KKLKTDSGED SAMKFSEDLS AFDPVLKFMT 300 SSEGTLDGSL DSILGTEMIQ DGINFMDLWS FEDIPISDMI F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-23 | 115 | 175 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 35 | KKKKKKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020574330.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A2I0WG80 | 1e-144 | A0A2I0WG80_9ASPA; Ethylene-responsive transcription factor 1 | ||||
STRING | XP_008784363.1 | 1e-97 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.2 | 3e-41 | related to AP2 2 |