PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14723 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 250aa MW: 28467.9 Da PI: 10.6384 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 59.9 | 6.4e-19 | 44 | 127 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ + +laLi+a+ +++++l+rg+l++ +W++v++++ ++ + ++++qC++k+e+l+kry+ +k+++ s + yf++++ PEQU_14723 44 CWSYEDTLALIDAYGDKWHSLGRGNLRASHWDDVAAAVarecpSSSAVPKTSVQCRHKIEKLRKRYRSEKQRSLF-----S--WLYFRKMD 127 7*************************************99999999**********************9987664.....3..88888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.1E-20 | 43 | 129 | No hit | No description |
SMART | SM00595 | 3.5E-6 | 52 | 134 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MASASPSSSA AAGATASPAA SPFPFPAVPP RSLPHSSRRF PPPCWSYEDT LALIDAYGDK 60 WHSLGRGNLR ASHWDDVAAA VARECPSSSA VPKTSVQCRH KIEKLRKRYR SEKQRSLFSW 120 LYFRKMDAME RGAAAAEEAG LRFTIPKAVR SKLVGFRPSP RAAIKPVLEE MRRRVEEKRM 180 KMRRNDDGIR DVASALGIFG EEFFRMEQMK VDVSREMEKM RMEMELKRTE MILDCQRQIV 240 ETMVHRFMGK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020582007.1 | 0.0 | trihelix transcription factor ASIL1 | ||||
TrEMBL | A0A2I0VRV3 | 1e-111 | A0A2I0VRV3_9ASPA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5689 | 32 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 6e-38 | Trihelix family protein |