PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14710 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | NF-YC | ||||||||
Protein Properties | Length: 213aa MW: 23322.4 Da PI: 5.2995 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 162.7 | 5.1e-51 | 1 | 102 | 4 | 102 |
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 +fw++q +e+++d+knh lPlarikki++adedv+misaeaP+l++kacelfilelt+rsw+haeenkrrtl+++diaaa+trt++fdflvdiv r+ PEQU_14710 1 MFWNYQrhsMERTADLKNHLLPLARIKKIMRADEDVRMISAEAPILFAKACELFILELTIRSWIHAEENKRRTLQRNDIAAAITRTEVFDFLVDIVSRE 99 699999999*****************************************************************************************9 PP NF-YC 100 elk 102 e+k PEQU_14710 100 EIK 102 875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.53E-30 | 10 | 92 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 5.1E-36 | 21 | 98 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-20 | 21 | 83 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MFWNYQRHSM ERTADLKNHL LPLARIKKIM RADEDVRMIS AEAPILFAKA CELFILELTI 60 RSWIHAEENK RRTLQRNDIA AAITRTEVFD FLVDIVSREE IKEIVVTAPQ QRGEGGAAGA 120 GVPYYYSAVE AAGVGGGGAP XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXGGGE 180 GSGGFDGGGM EVQEGYGGVG NPAPPTHLPP SGF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-49 | 6 | 98 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 76 | RRTLQRN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020586189.1 | 3e-93 | nuclear transcription factor Y subunit C-4-like | ||||
Swissprot | Q9FMV5 | 1e-64 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A2I0X0Z5 | 9e-64 | A0A2I0X0Z5_9ASPA; Nuclear transcription factor Y subunit C-4 | ||||
STRING | XP_008239482.1 | 2e-64 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7345 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 6e-63 | nuclear factor Y, subunit C4 |