PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14447 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | ERF | ||||||||
Protein Properties | Length: 300aa MW: 33785.7 Da PI: 9.1426 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.6 | 2.4e-21 | 99 | 148 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f+t+eeAaka++aa++k++g PEQU_14447 99 QFRGIRQRP-WGKWAAEIRDPRK---GERVWLGTFDTPEEAAKAYDAAARKIRG 148 69*******.**********954...3*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-23 | 99 | 157 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-36 | 99 | 162 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-33 | 99 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.64E-23 | 99 | 158 | No hit | No description |
PROSITE profile | PS51032 | 24.276 | 99 | 156 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-14 | 100 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 100 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 122 | 138 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MCGGAIISDF ISTSSLRSSR VTANKLWPDR RRKSKGGRRI RAAVFDDDFE ADFQEFEDDP 60 EEEELENLFE VKPLVFRPKA SSFSRGPNDK SSKRKRKNQF RGIRQRPWGK WAAEIRDPRK 120 GERVWLGTFD TPEEAAKAYD AAARKIRGKK AKVNFPDDGP KIPQTHLPKM SSTKTCKPNS 180 SQEFCFNNSF GYSNNMNYNV YSSSGLEAKE QFKVDSAISS PLEPIINFRS EQESNSLNCS 240 GFGWERETNF PEITSIPPPI VEDIKSEFVE ETAAPMKKLK NNSGEAVSAD QAAAGRALSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-22 | 98 | 158 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 29 | 34 | RRRKSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020587413.1 | 0.0 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A2I0VB61 | 1e-126 | A0A2I0VB61_9ASPA; Ethylene-responsive transcription factor 1 | ||||
STRING | XP_008797374.1 | 2e-82 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 6e-38 | related to AP2 2 |