PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14407
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family GRAS
Protein Properties Length: 356aa    MW: 39002.4 Da    PI: 6.4164
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14407genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS174.11.1e-53233013374
        GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeer 111
                 +sg+ ++aq+lL  l+elasp+gd+++Rla+y ++AL + l++     ++ ++p+           +al  f+evsP++ f + +aN aI+ a  g +r
  PEQU_14407   2 ESGNVSRAQHLLYVLQELASPTGDANHRLAFYGLKALTRCLTG----GFADMEPKGF--------RSALIKFHEVSPWFAFPNCLANAAIVSASVGGRR 88 
                 789***************************************9....3333344433........456667**************************** PP

        GRAS 112 vHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                 +H++D ++s+G+QWp++l+aL+ Rp++pp ++++T+v++ + g   s+ e    g +L ++A++++v++  +     r e+    + r   +E ++V+ 
  PEQU_14407  89 LHVVDAGVSHGVQWPTMLEALTRRPGEPPaMVKLTVVDAGSGGpfgSAPEGYDFGPQLMRYAKSIDVDLIVE-----RGEMAG--RRRRGDEERVVVCA 180
                 *************************776669********777799**********************98544.....444442..22345599999999 PP

        GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsleakl.preseerikvErellgreivnvvacega 303
                 +++  r              +L++v++++P++vv++e e    ++  +  +f + +e ++ +++s++a + +re eer++vEre     +   v  eg+
  PEQU_14407 181 QFRAGRAG------V----GFLRAVREMEPDLVVLSEVEEGEgDGLGLGLGFGSRVEAMWRFLESTNAAFkGRECEERRVVERE-----AAR-VLEEGR 263
                 99888887......4....5*****************9966648889*******************777603333666666666.....444.566777 PP

        GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 e        e+W+e++e  GF++ +++e++ +  ++llrk++ +++++  +e g ++l+Wk++++ ++S W+
  PEQU_14407 264 E-----GGRERWKEKMEGLGFREEEFGEEVLEVGRALLRKYDgNWEMMRGSEGGGVMLCWKGQSVSFCSLWK 330
                 7.....77889*******************************88889999999******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098528.3531309IPR005202Transcription factor GRAS
PfamPF035143.8E-512330IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MESGNVSRAQ HLLYVLQELA SPTGDANHRL AFYGLKALTR CLTGGFADME PKGFRSALIK  60
FHEVSPWFAF PNCLANAAIV SASVGGRRLH VVDAGVSHGV QWPTMLEALT RRPGEPPAMV  120
KLTVVDAGSG GPFGSAPEGY DFGPQLMRYA KSIDVDLIVE RGEMAGRRRR GDEERVVVCA  180
QFRAGRAGVG FLRAVREMEP DLVVLSEVEE GEGDGLGLGL GFGSRVEAMW RFLESTNAAF  240
KGRECEERRV VEREAARVLE EGREGGRERW KEKMEGLGFR EEEFGEEVLE VGRALLRKYD  300
GNWEMMRGSE GGGVMLCWKG QSVSFCSLWK PVRHKTTATE AVAAAAGAYG NVIGHY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-345332102475Protein SHORT-ROOT
5b3h_B1e-34533248421Protein SHORT-ROOT
5b3h_E1e-34533248421Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020587365.10.0nodulation-signaling pathway 1 protein-like
SwissprotQ4VYC81e-100NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLA0A3G2CI280.0A0A3G2CI28_CYMEN; Nodulation-signaling pathway1-like protein-like
STRINGXP_008797335.11e-130(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.16e-59GRAS family protein
Publications ? help Back to Top
  1. Cerri MR, et al.
    Medicago truncatula ERN transcription factors: regulatory interplay with NSP1/NSP2 GRAS factors and expression dynamics throughout rhizobial infection.
    Plant Physiol., 2012. 160(4): p. 2155-72
    [PMID:23077241]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]