PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | LBD | ||||||||
Protein Properties | Length: 312aa MW: 34343.7 Da PI: 6.6352 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.7 | 4e-38 | 51 | 149 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dC+lap fpae++ +f n+h+lFG+sn+lk+lk+++e++r++am+s+++++++ra+dP G++++il+lq+q+e + ++l+++ + PEQU_14392 51 ACAACKYQRRKCSPDCTLAPFFPAEKHLQFINAHRLFGVSNILKILKSVDESHRQEAMNSIIFQSNIRAQDPSGGCYRIILNLQRQIEATYTQLQHVLN 149 7****************************************************************************************9999988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.716 | 50 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-36 | 51 | 146 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MKPPLPPISI PPPNYAKKQR NRAHPNPPIS SPHSPSPKLN MGPLTSPSSS ACAACKYQRR 60 KCSPDCTLAP FFPAEKHLQF INAHRLFGVS NILKILKSVD ESHRQEAMNS IIFQSNIRAQ 120 DPSGGCYRII LNLQRQIEAT YTQLQHVLNQ VAFLRSQFNP AADGAADIDA IYGLQQPQQH 180 CNNFCFAYDV PKDLQGAHEH GINGHDNVNP IDIGNEELRQ QVLFGIQGKE GREEGVDVRS 240 LADMYGMQHG FGICKEQEDA AQNISIGSTI TGLCSSMAEA KADANIIDEV QEHDLRSAAS 300 FFSLNNCDTQ AI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-23 | 42 | 144 | 2 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-23 | 42 | 144 | 2 | 104 | LOB family transfactor Ramosa2.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020577312.1 | 0.0 | LOB domain-containing protein 35-like | ||||
TrEMBL | A0A2I0WKW9 | 5e-72 | A0A2I0WKW9_9ASPA; LOB domain-containing protein 22 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5228 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-41 | LOB domain-containing protein 22 |