PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PEQU_14314 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
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Family | Trihelix | ||||||||
Protein Properties | Length: 258aa MW: 29713.8 Da PI: 10.6229 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 45.6 | 1.8e-14 | 22 | 110 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ e+ L++a ++ +l+rg+l++++W+ev++++ r r+ +qCk++++ l+k+yk +k +++ +s+++++++l+ PEQU_14314 22 CWSEGETSMLVDAWGDRYLELNRGNLRQKQWQEVADAVnarpgGGRRPPRTDVQCKNRIDTLKKKYKIEKSKISDG--AFVSQWAFYSRLD 110 7*************************************88655445557899*******************99997..78889*****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.0E-26 | 20 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-4 | 23 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MEGRDAAPAR PPNPAMPYRE DCWSEGETSM LVDAWGDRYL ELNRGNLRQK QWQEVADAVN 60 ARPGGGRRPP RTDVQCKNRI DTLKKKYKIE KSKISDGAFV SQWAFYSRLD MLIGSSVSAK 120 KPPSSPPLAL PLPSHRKGLP DSRSSSRSSR SSMERSGSSR EKSGRGWKKG RERSDRDGIR 180 ELARAIERFA EIYEKVEGDK QRQMIELEKQ RMEFIKGLEF QRMQMFVDTQ VQMEKIKRIR 240 RSDSGERLSL SALSFFYF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020705771.1 | 1e-108 | trihelix transcription factor ASIL2 | ||||
Swissprot | Q9LJG8 | 8e-37 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A2I0WAG7 | 1e-108 | A0A2I0WAG7_9ASPA; Uncharacterized protein | ||||
TrEMBL | M0SWZ5 | 1e-108 | M0SWZ5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P09160_001 | 1e-109 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2065 | 32 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14180.1 | 2e-27 | sequence-specific DNA binding transcription factors |