PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_14090
Organism
Phalaenopsis equestris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family ARF
Protein Properties Length: 642aa    MW: 72352.6 Da    PI: 6.349
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_14090genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.3e-24106208198
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++ +++a+e+       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F+++ ++++el
  PEQU_14090 106 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQNPPWQ--ELVAKDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFMRQVNESGEL 202
                 99****************************986555545..8************************************************9988***** PP

                 EEEEE- CS
          B3  93 vvkvfr 98 
                 +v+v+r
  PEQU_14090 203 CVGVRR 208
                 ****98 PP
2Auxin_resp107.21.9e-35234316183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha+st++ F+v+Y+Pras s+F+++v+k+++a ++++svGmRfkm+fe+++++err+ Gt++g+ +  +++Wp+S+WrsLk
  PEQU_14090 234 ASHALSTRTLFSVFYKPRASCSQFIISVNKYLEARSQNLSVGMRFKMRFEGDEAPERRFCGTIIGIIENTSSSWPDSNWRSLK 316
                 789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.57E-4195237IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.1E-39100223IPR015300DNA-binding pseudobarrel domain
CDDcd100173.62E-21104208No hitNo description
PfamPF023627.2E-22106208IPR003340B3 DNA binding domain
PROSITE profilePS5086311.35106210IPR003340B3 DNA binding domain
SMARTSM010191.2E-20106210IPR003340B3 DNA binding domain
PfamPF065071.8E-32234316IPR010525Auxin response factor
PfamPF023092.1E-11531630IPR033389AUX/IAA domain
SuperFamilySSF542772.26E-10534618No hitNo description
PROSITE profilePS5174523.382540633IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
LYKELWHACA GPLVTLPRQK ERVYYFPQGH MEQLQASTHQ GLDQQMPLFD LPSKILCRVV  60
NVELRAESDT DEVYAQITLQ PESDQSEVTS PDSPLPEPDS SMVHSFCKTL TASDTSTHGG  120
FSVLRRHADE CLPPLDMTQN PPWQELVAKD LHGNEWHFRH IFRGQPRRHL LTTGWSVFVS  180
SKRLVAGDAF IFMRQVNESG ELCVGVRRLM RQLNNMPSSV ISSHSMHLGV LATASHALST  240
RTLFSVFYKP RASCSQFIIS VNKYLEARSQ NLSVGMRFKM RFEGDEAPER RFCGTIIGII  300
ENTSSSWPDS NWRSLKIQWD EPSSIPRPDC ISPWELEPMA VAPPLISQPA IRSKRARPPL  360
SSSVPQEFSS VYGPWKSQSE ANQSLPFSGL QRGHESFSLP YSSLVHPPPK LGSVAINSNV  420
GQPAADRPTV YWPTRPETQS ESFSTTSMNV LQSNEKTQEA SGGIMLFGIQ LIEMSTVAED  480
TSSMAAITDV VRDANDHLGV DFEHHSRPSN LNQSDGTELS TEPENSCLRS SQESQSKQTR  540
SCTKVHMQGM AVGRAVDLTR LEGYEDLLRK LEEMFSIQGE LFGDTKKWQV AYTDDEYDMR  600
MVGDYPWHEF CNMVKKIYIY TYEEAKRLSP KSMLEKSSLT AK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.0133919355Auxin response factor 1
4ldw_A0.0133919355Auxin response factor 1
4ldw_B0.0133919355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020585669.10.0auxin response factor 7-like isoform X1
RefseqXP_020585670.10.0auxin response factor 7-like isoform X1
RefseqXP_020585672.10.0auxin response factor 7-like isoform X1
RefseqXP_020585673.10.0auxin response factor 7-like isoform X1
RefseqXP_020585674.10.0auxin response factor 7-like isoform X1
SwissprotQ6YVY00.0ARFG_ORYSJ; Auxin response factor 7
TrEMBLA0A2I0XEQ00.0A0A2I0XEQ0_9ASPA; Auxin response factor
STRINGXP_008795276.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]